Table 2. Common motifs in the promoter regions of diurnal pattern genes in phases.

Element	Phase	0	2	4	6	8	10	12	14	16	18	20	22	Annotation
*TATC*	Flag leaf	√	√						√	√	√	√	√	Evening Element (EE)
	Seedling								√	√	√	√
*GGCCCA*	Flag leaf	√	√	√	√	√	√			√	√	√	√	Element II ofArabidopsis PCNA-2
	Seedling	√	√	√	√
*TGGGCC*	Flag leaf	√	√	√	√					√	√	√	√	Element II ofArabidopsis PCNA-2
	Seedling	√	√
*AGCCCA*	Flag leaf										√	√	√	Element II ofArabidopsis PCNA-2
	Seedling
*GCCCA*	Flag leaf	√	√	√	√	√	√			√	√	√	√	overrepresented inthe OxPhos promoter
	Seedling	√	√	√	√
*GGCCC*	Flag leaf	√	√	√	√	√	√				√	√	√	SORLIP2AT
	Seedling	√	√	√	√
*GGGCC*	Flag leaf	√	√	√	√	√	√			√	√	√	√	SORLIP2AT
	Seedling	√	√	√	√
*GCCGCC*	Flag leaf	√										√		GCCCORE
	Seedling
*AACCCT*	Flag leaf										√	√	√	TBX,overrepresentedaround midnight
	Seedling											√
*GATAA*	Flag leaf	√	√	√	√	√							√	I-box; rbcSt;
	Seedling									√	√
*CAAAAC*	Flag leaf				√	√					√	√		ANAERO4CONSENSUS
	Seedling
*CGCTT*	Flag leaf											√		WINPSTPIIIK
	Seedling	√
*AAAG*	Flag leaf	√	√	√	√	√	√	√	√		√	√	√	DOFCOREZM
	Seedling	√	√	√	√				√	√	√	√
*CCACAC*	Flag leaf					√	√	√						morning element (ME)RBCSBOX2PS
	Seedling					√	√
*CACGTG*	Flag leaf					√	√	√	√		√			G-box/ABRE
	Seedling
*ACGTG*	Flag leaf					√	√	√	√	√	√			ACGTATERD1
	Seedling					√
*GCCAC*	Flag leaf					√	√							SORLIP1AT
	Seedling				√	√	√
*CGCG*	Flag leaf			√	√	√	√	√	√					AtSR1(CaMBP)
	Seedling			√	√	√
*CGACG*	Flag leaf					√	√	√						CGACG element
	Seedling
*GAAAAA*	Flag leaf			√	√	√	√	√	√	√				GT1CONSENSUS andGT1GMSCAM4
	Seedling				√	√				√	√	√
*GAGAC*	Flag leaf				√	√	√	√						SURECOREATSULTR11
	Seedling
*AAATAA*	Flag leaf					√	√							TATABOX5
	Seedling				√	√
*AAAATC*	Flag leaf								√	√	√	√		ARR1AT and EECCRCAH1
	Seedling									√	√
*ATGTCA*	Flag leaf										√	√		BIHD1OS and WRKY71OS
	Seedling

Sign √ indicates the element significantly present in the promoters of the genes shown diurnal pattern in proper phase.