Table 1. Functional Annotation Chart, performed using DAVID Bioinformatics tool.
KEGG pathways | Genes | p-Value | Benjamini (corrected p-value) |
Pathways in cancer | BCL2, E2F1, E2F3, CASP3, EGFR, VEGF, COL4A1, COL4A2, CD1, CDK6, p21, p27, CDKI2A, JUN, MET, MSH2, RAS, PTEN, RB1, TGFb2, MYC | 3.8E-11 | 1.8E-9 |
Bladder cancer | E2F1, E2F3, EGFR, CD1, CDKI2A, CDKI1A, RAS, RB1, VEGF, MYC, THBS1 | 8.7E-12 | 8.4E-10 |
Chronic myeloid leukemia | E2F1, E2F3, CD1, CDK6, CDKI1A, CDKI1B, CDKI2A, RAS, RB1, TGFb2, MYC | 3.7E-9 | 9.1E-8 |
Small cell lung cancer | BCL2, E2F1, E2F3, COL4A1, COL4A2, CD1, CDKI1B, CDK6, PTEN, RB1, MYC | 1.2E-8 | 2.3E-7 |
Melanoma | E2F1, E2F3, CD1, CDKI2A, CDKI1A, CDK6, EGFR, RAS, RB1, PTEN, MET | 2.2E-9 | 7.0E-8 |
Glioma | E2F1, E2F3, CD1,CDKI2A, CDKI1A, CDK6, EGFR, RAS, RB1, PTEN | 1.3E-8 | 2.1E-7 |
We report the Gene Ontology (GO) Terms and KEGG pathways Over-represented among Joint Target Genes, performed using DAVID Bioinformatics tool. For each row the corresponding Benjamini (corrected for multiple testing) as well as the raw hypergeometric p-values are indicated.