Table 2.
C. trachomatis D/UW-3/CX putative Inc proteins.
| Sequence ID | 0rtholog Group # (1) | Length (aa) | TM segments (2) | TM coordinates (3) | Additional feature(s) |
|---|---|---|---|---|---|
| CT005 | 667 | 363 | 4 | [34-54]6[60-81]5[95-119]6[124-146] | |
| CT006 | 485 | 189 | 3 | [89-112]5[117-138] | |
| CT018 | 714 | 157 | 3 | [91-105]2[107-121] | |
| CT036 | 989 | 403 | 2 | [28-50]6[56-75] | |
| CT058 | 722 | 367 | 2 | [26-48]5[53-76] | Macro domain |
| CT079 | 580 | 147 | 2&SP | [SP 1-13][35-68]13[81-102] | |
| CT081 | 983 | 98 | 2 | [39-58]12[70-96] | |
| CT101 | 236 | 153 | 3&SP | [SP 1-25]-[38-56] & [95-113]6[119-138] | |
| CT115 | 987 | 141 | 2 | [37-61]7[68-93] | Inclusion Membrane Protein D (IncD) |
| CT116 | 982 | 132 | 2 | [36-59]5[64-87] | Inclusion Membrane Protein E (IncE) |
| CT117 | 961 | 104 | 2 | [38-62]8[70-91] | Inclusion Membrane Protein F (IncF) |
| CT118 | 988 | 167 | 2 | [33-57]6[63-88] | Inclusion Membrane Protein G (IncG) |
| CT119 | 264 | 273 | 2 | [35-59]5[64-84] | Inclusion Membrane Protein A (IncA) extended coiled coils |
| CT134 | 980 | 137 | 3 | [80-98]7[105-122] | |
| CT135 | 713 | 360 | 3 | [210-236]6[242-268] | |
| CT147 | 553 | 1449 | 4 | [79-99]6[105-124] & [849-870]6[876-896] | extended coiled coils |
| CT164 | No ortholog | 86 | 2 | [31-53]7[60-80] | |
| CT179 | 682 | 170 | 2 | [2-19]11[30-52] | |
| CT192 | 969 | 257 | 2 | [58-81]6[87-108] | |
| CT195 | 132 | 363 | 6 | [53-74]7[81-104] & [173-194]2[196-215] & [238-252]2[254-268] | |
| CT196 | 977 | 106 | 2 | [34-57]6[63-85] | |
| CT214 | 877 | 547 | 3 | [36-58]6[64-89] | |
| CT222 | No ortholog | 129 | 2 | [39-63]6[69-93] | |
| CT223 | 842 | 270 | 3 | [38-61]6[67-91] & [180-194] | extended coiled coils |
| CT224 | No ortholog | 147 | 2 | [35-58]8[66-87] | |
| CT225 | No ortholog | 122 | 2 | [12-38]6[44-66] | |
| CT226 | 979 | 176 | 2 | [45-68]6[74-99] | coiled coils and Leucine zipper |
| CT227 | 963 | 133 | 2 | [36-64]2[66-88] | |
| CT228 | 964 | 196 | 2 | [38-59]6[65-86] | coiled coils |
| CT229 | 965 | 215 | 2 | [42-65]6[71-90] | coiled coils |
| CT232 | 79 | 115 | 2 | [31-61]6[67-90] | |
| CT233 | 26 | 178 | 2 | [100-127]13[140-164] | Inclusion Membrane Protein B (IncB) |
| CT249 | 966 | 116 | 2 | [51-72]6[78-97] | Inclusion Membrane Protein C (IncC) |
| CT288 | 774 | 563 | 4 | [36-58]7[65-88] & [242-263]6[269-291] | coiled coils |
| CT300 | 990 | 115 | 2 | [34-54]12[66-95] | |
| CT324 | 772 | 303 | 3 | [75-93]6[99-119] | |
| CT326 | 462 | 563 | 4 | [323-337]2[339-353]12[365-382] & [438-461] | DUF687 |
| CT345 | 972 | 121 | 2 | [31-53]6[59-82] | |
| CT357 | 986 | 110 | 2 | [37-58]6[64-86] | |
| CT358 | 968 | 178 | 2 | [45-70]6[76-100] | |
| CT365 | 141 | 575 | 10 | [54-77]6[83-105]20[125-146]15[161-179]29 [208-233]6[239-262] & [338-360]6[366-392] & [471-491]6[497-517] | |
| CT383 | 238 | 243 | 2 | [104-130]6[136-157] | |
| CT440 | 411 | 112 | 2 | [32-53]7[60-85] | |
| CT442 | 515 | 150 | 2 | [38-61]6[67-88] | 15 kDa Cysteine-Rich Protein (CrpA) |
| CT449 | 976 | 110 | 2 | [42-63]6[69-87] | |
| CT483 | 316 | 121 | 2 | [39-62]20[82-105] | |
| CT484 | 467 | 332 | 2 | [29-51]6[57-80] | Tetratrico Peptide Repeats (TPRs) |
| CT556 | 496 | 159 | 2 | [100-123]12[135-152] | |
| CT565 | 340 | 147 | 2 | [49-81]25[106-135] | |
| CT616 | 286 | 429 | 2 | [39-59]6[65-84] | UPF0242 extended coiled coils |
| CT618 | 612 | 266 | 2 | [213-236]6[242-262] | |
| CT642 | 344 | 271 | 2 | [167-188]2[190-205] | |
| CT788 | 597 | 166 | 2 | [6-26]7[33-54] | |
| CT789 | No ortholog | 83 | 2 | [12-30]28[58-78] | |
| CT813 | 978 | 264 | 2 | [41-61]7[68-94] | coiled coils |
| CT814.1 | 160 | 120 | 3 | [6-32]20[52-69]28[97-116] | |
| CT837 | 176 | 658 | 2 | [543-561]12[573-592] | |
| CT850 | 151 | 405 | 4 | [24-46]2[48-68] & [71-91]4[95-119] | extended coiled coils |
| CT873 | No ortholog | 105 | 2 | [29-43]2[45-59] | |
| TOTAL | 59 proteins | ||||
(1) Number of the group of orthologs to which the protein belongs (2) total number of transmembrane segments detected by Polyphobius predictor algorithm (transmembrane segments identified as signal peptides are noted SP). (3) [first-last] amino acid of the transmembrane segment for each bilobal domain, the number of amino acids in the loop appears in bold. Additional features contain information extracted from genome annotations and from the present analysis.