Table 7.
Additional SNPs identified using the relaxed filter.
| SNP | Disease(s) | Characterized genes in duplicons |
|---|---|---|
| rs10147986 | CD | (40 duplicons) |
| rs10502407 | BD | [CIDEA] |
| rs10896468 | CAD | OR8U8, OR5M8 |
| rs11010995 | RA | - |
| rs11028186 | RA | ALG1L, ASNS, [ZNF195], [FAM86B2], [DEFB10P1], [DEFA5], [ZFYVE20] |
| rs11053044 | T2D | ALG10, ALG10B |
| rs11118278 | CAD | CR1L, MCP |
| rs1192923 | HT | [ORAOV1] |
| rs12227938 | BD, CAD, T1D | ALG10, ALG10B |
| rs12256867 | T2D | ZNF33A, ZNF37A, ZNF33B, ZNF37B, [ZNF25] |
| rs12413153 | CAD | DDX18, BTBD15, WDR22, [IBRDC2] |
| rs1291361 | BD | HTR7, HTR7P, [HEBP1] |
| rs1404223 | CAD | - |
| rs17080801 | T2D | PARP4, TPTE2 |
| rs17230081 | T2D | ORM1, ORM2 |
| rs17636964 | CD | IPMK |
| rs17645907 | T2D | [POMZP3] |
| rs1842055 | CAD | - |
| rs1868584 | CAD, HT, RA, T1D | ROCK2, CGGBP1, [ZNF654] |
| rs2120273 | BD | - |
| rs2236014 | BD | MTRF1L, [FBX05] |
| rs2515832 | RA | MAGEA12, CSAG1, MAGEA2, MAGEA3, TRAG3, |
| [MAGEA6] | ||
| rs2523544 | T1D | DHFRP2, DHFRL1, DHFR, PSMA8, [HLA-B], [MSH3], [NSUN3] |
| rs2617729 | CD, T2D | ZNF761, ZNF765, ZNF813, [ZNF331] |
| rs330201 | CAD | MRPL10, [LRRC46], [OSBPL7] |
| rs3858741 | BD, CD, HT | PSPC1, [TUBA3C] |
| rs4318932 | CD | TYW1, TYW1B, [STAG3L4] |
| rs4453734 | CAD, RA | - |
| rs4473816 | RA | [GSPT2] |
| rs4532803 | BD, HT | ELA3A, ELA3B, [HSPC157] |
| rs4545817 | BD | ALG1, FAM86A, [COL6A4P2] |
| rs4881702 | BD | - |
| rs500192 | BD, T1D | TBL1XR1 |
| rs5946541 | BD | [BAGE] |
| rs6427130 | RA | XCL1, XCL2 |
| rs6463213 | BD, T2D | RBAK, RNF216L, XKR8 |
| rs6744284 | BD | UGT1A3 -UGT1A10 |
| rs6945984 | RA | CYP3A4, CYP3A7, [CYP3A5] |
| rs7259082 | CAD | ZNF737, M74509, ZNF66 |
| rs7549545 | BD | [IER5] |
| rs7677996 | T1D | [UGT2B7] |
| rs7808342 | BD | - |
| rs940331 | T2D | [ZNF735], [ZNF716] |
| rs9551988 | T2D | PSPC1, [TUBA3C] |
| rs9624808 | T1D | LRP5, LRP5L |
| rs9665670 | BD, CAD | [PDSS1] |
| rs9775226 | CD, HT | (40 duplicons) |
| SNP_A-1797773 | BD, CD | VPS35, [ORC6L] |
| SNP_A-1817967 | CD | FAM22A |
| SNP_A-1858955 | RA | GUSBL1, GUSBL2, SMA4, GUSBP1, [RGL4] |
Genes in square brackets are outside the duplicons, but a duplicon is at most 30 kb upstream of the gene. Genes for two SNPs having 40 duplicons each are omitted.