Table 1. Structural-derived energetic parameters calculated based on the crystal structures of N-terminal truncated forms of RIα.
Parameter | cAMP-boundPDB 1RGS(residues 113–376) | cAMP-free (apo)*PDB 1RL3(residues 109–376) | cAMP-free (apo)** PDB 2QCS(residues 90–380) |
ΔASA ap (Å2) | 18746 | 19535 | 19938 |
ΔASA pol (Å2) | 10598 | 11526 | 12194 |
ΔC p_calc (kcal/K·mol) | 5.7 | 5.8 | 5.8 |
ΔH calc_60 (kcal/mol) | 174.5 | 197.0 | 214.6 |
T m (°C) | 71 | 62.5 | 62.5 |
ΔH calc_at Tm (kcal/mol) | 236 | 212 | 230 |
Experimental values for cAMP-free (apo)-RIα(92–381); T m = 62.5±0.1°C, ΔH = 111.6±2.9 kcal/mol and ΔH VH = 96.3±2.1 kcal/mol.
Experimental values for cAMP-bound RIα(92–381); T m = 71.0±0.1°C, ΔH = 120.4±1.2 kcal/mol and ΔH VH = 139.9±1.4 kcal/mol (with 800 µM cAMP; 4 µM RIα(92–381)).
*The cGMP present in site A was not included the calculations.
**The C structure was not included in the calculations.
Theoretical values for the unfolding heat capacity (ΔC p_calc) and enthalpy changes at 60°C (ΔH calc_60) and at the Tm (ΔH calc_at Tm) were calculated from the changes in apolar and polar accessible surface area (ΔASA ap and ΔASA pol) upon unfolding using structure-energetics correlations (see [22] for equations).