Abstract
The title compound, C20H16N2O4S, was prepared by introduction of a 2-nitrobenzyl group to 2-(furan-2-yl)-2,3-dihydro-1,5-benzothiazepin-4(5H)-one via an alkaline-catalysed reaction. The thiazepine ring adopts a twist-boat conformation. The furan ring is oriented at dihedral angles of 56.75 (14) and 10.82 (14)° with respect to the two benzene rings, while the two benzene rings make a dihedral angle of 62.96 (10)°. Weak intermolecular C—H⋯O hydrogen bonds occur in the crystal structure.
Related literature
The title compound was prepared as part of an investigation of novel GSK 3β inhibitors. For applications of non-ATP competitive glycogen synthase kinase 3β(GSK 3β) inhibitors, see: Martinez et al. (2002 ▶).
Experimental
Crystal data
C20H16N2O4S
M r = 380.41
Monoclinic,
a = 11.061 (3) Å
b = 8.538 (3) Å
c = 19.340 (6) Å
β = 105.535 (4)°
V = 1759.7 (9) Å3
Z = 4
Mo Kα radiation
μ = 0.21 mm−1
T = 293 K
0.18 × 0.16 × 0.14 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.963, T max = 0.971
7699 measured reflections
3458 independent reflections
2755 reflections with I > 2σ(I)
R int = 0.038
Refinement
R[F 2 > 2σ(F 2)] = 0.047
wR(F 2) = 0.140
S = 1.10
3458 reflections
244 parameters
12 restraints
H-atom parameters constrained
Δρmax = 0.32 e Å−3
Δρmin = −0.34 e Å−3
Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052098/xu5112sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052098/xu5112Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C2—H2A⋯O2i | 0.93 | 2.49 | 3.401 (3) | 168 |
| C12—H12A⋯O2ii | 0.93 | 2.59 | 3.381 (3) | 144 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors acknowledge Dr Z. Chen for fruitful discussions and the Department of Chemistry, Fudan University, for the data collection.
supplementary crystallographic information
Comment
Non-ATP competitive glycogen synthase kinase 3β(GSK 3β) inhibitors might have therapeutic potential for the treatment of diabetes, Alzheimer's disease and cancer (Martinez et al., 2002). The title compound, 5-(2-nitrobenzyl)-2-(furan-2-yl)-2,3-[b][1,4]thiazepin-4(5H)-one(I), was obtained in our research for novel GSK 3β inhibitors. We report here the crystal structure of the title compound in order to study the relationship between its structure and GSK 3β inhibitory activity.
The molecular structure of the title compound presented on Fig.1. In the crystal structure, the thiazepine ring adopts a similar boat form, while the dihedral angles between the furan ring and the C8>C13, C15>C20 benzene rings are 56.7° and 10.7°, respectively. The dihedral angle between C8>C13 and C15>C20 benzene rings is 63.0°. The crystal packing is stabilized by C—H···O and C—H···N hydrogen bonds (Table 1).
Experimental
A mixture of 2-(furan-2-yl)-2,3-dihydro-1,5-benzothiazepin-4(5H)-one (495 mg, 2 mmol) and 60% sodium hydride (240 mg, 6 mmol) in dry N,N-dimethylformamide (8 ml) was stirred in ice water bath for 30 minutes, then a solution of 1-(bromomethyl)-2-nitrobenzene (864 mg, 6 mmol) in dry N,N-Dimethylformamide (6 ml) was added and the resulted mixture was stirred for another 30 minutes. The target compound was extracted by ethyl acetate. After the ethyl acetate evaporated in vacuo, the residue was purified by silica gel column chromatography (petroleum ether / ethyl acetate = 10 / 3) to afford 577 mg of (I), yield 76%. Recrystallization from methanol gave light yellow crystals.
Refinement
All H atoms were placed in the idealized positions with C—H = 0.93–0.97 Å, and with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The molecular structure of the title compound showing displacemment ellipsoids at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius.
Crystal data
| C20H16N2O4S | F(000) = 792 |
| Mr = 380.41 | Dx = 1.436 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 1000 reflections |
| a = 11.061 (3) Å | θ = 2.6–26.7° |
| b = 8.538 (3) Å | µ = 0.21 mm−1 |
| c = 19.340 (6) Å | T = 293 K |
| β = 105.535 (4)° | Block, light-yellow |
| V = 1759.7 (9) Å3 | 0.18 × 0.16 × 0.14 mm |
| Z = 4 |
Data collection
| Bruker SMART CCD area-detector diffractometer | 3458 independent reflections |
| Radiation source: fine-focus sealed tube | 2755 reflections with I > 2σ(I) |
| graphite | Rint = 0.038 |
| φ and ω scans | θmax = 26.0°, θmin = 1.9° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −13→13 |
| Tmin = 0.963, Tmax = 0.971 | k = −9→10 |
| 7699 measured reflections | l = −23→16 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.140 | H-atom parameters constrained |
| S = 1.10 | w = 1/[σ2(Fo2) + (0.0823P)2 + 0.133P] where P = (Fo2 + 2Fc2)/3 |
| 3458 reflections | (Δ/σ)max < 0.001 |
| 244 parameters | Δρmax = 0.32 e Å−3 |
| 12 restraints | Δρmin = −0.34 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.88992 (5) | 0.50517 (6) | 0.22528 (3) | 0.04348 (19) | |
| N1 | 0.86748 (14) | 0.47987 (17) | 0.06247 (8) | 0.0344 (4) | |
| N2 | 0.54187 (16) | 0.5826 (2) | −0.12646 (8) | 0.0452 (4) | |
| O1 | 1.1607 (2) | 0.6320 (2) | 0.34025 (9) | 0.0879 (7) | |
| O2 | 0.95960 (14) | 0.70935 (17) | 0.05012 (8) | 0.0517 (4) | |
| O3 | 0.62377 (17) | 0.5009 (2) | −0.13854 (8) | 0.0672 (5) | |
| O4 | 0.44565 (16) | 0.6131 (2) | −0.17221 (9) | 0.0748 (5) | |
| C1 | 1.2646 (3) | 0.5769 (3) | 0.38975 (14) | 0.0791 (9) | |
| H1A | 1.2950 | 0.6160 | 0.4360 | 0.095* | |
| C2 | 1.3141 (2) | 0.4647 (4) | 0.36370 (14) | 0.0702 (7) | |
| H2A | 1.3846 | 0.4070 | 0.3869 | 0.084* | |
| C3 | 1.2399 (3) | 0.4454 (4) | 0.29201 (15) | 0.0882 (10) | |
| H3A | 1.2542 | 0.3736 | 0.2589 | 0.106* | |
| C4 | 1.14695 (19) | 0.5473 (2) | 0.28057 (10) | 0.0419 (5) | |
| C5 | 1.04068 (17) | 0.5900 (2) | 0.21861 (10) | 0.0394 (4) | |
| H5A | 1.0320 | 0.7042 | 0.2191 | 0.047* | |
| C6 | 1.06808 (18) | 0.5463 (2) | 0.14781 (10) | 0.0408 (5) | |
| H6A | 1.1432 | 0.6006 | 0.1442 | 0.049* | |
| H6B | 1.0844 | 0.4347 | 0.1476 | 0.049* | |
| C7 | 0.96163 (17) | 0.5866 (2) | 0.08346 (10) | 0.0383 (4) | |
| C8 | 0.86766 (16) | 0.3349 (2) | 0.09979 (9) | 0.0348 (4) | |
| C9 | 0.87861 (17) | 0.3321 (2) | 0.17369 (10) | 0.0393 (4) | |
| C10 | 0.8751 (2) | 0.1872 (3) | 0.20661 (12) | 0.0523 (5) | |
| H10A | 0.8841 | 0.1833 | 0.2558 | 0.063* | |
| C11 | 0.8586 (2) | 0.0509 (3) | 0.16798 (13) | 0.0585 (6) | |
| H11A | 0.8519 | −0.0438 | 0.1904 | 0.070* | |
| C12 | 0.8520 (2) | 0.0544 (3) | 0.09558 (13) | 0.0513 (5) | |
| H12A | 0.8435 | −0.0384 | 0.0695 | 0.062* | |
| C13 | 0.85800 (18) | 0.1954 (2) | 0.06219 (11) | 0.0417 (5) | |
| H13A | 0.8555 | 0.1970 | 0.0138 | 0.050* | |
| C14 | 0.77070 (18) | 0.5078 (2) | −0.00482 (10) | 0.0371 (4) | |
| H14A | 0.7365 | 0.4077 | −0.0245 | 0.045* | |
| H14B | 0.8098 | 0.5556 | −0.0389 | 0.045* | |
| C15 | 0.66344 (16) | 0.6118 (2) | 0.00252 (9) | 0.0339 (4) | |
| C16 | 0.55868 (17) | 0.6482 (2) | −0.05424 (9) | 0.0368 (4) | |
| C17 | 0.46416 (19) | 0.7472 (2) | −0.04634 (11) | 0.0452 (5) | |
| H17A | 0.3964 | 0.7693 | −0.0854 | 0.054* | |
| C18 | 0.4709 (2) | 0.8125 (2) | 0.01949 (12) | 0.0494 (5) | |
| H18A | 0.4080 | 0.8794 | 0.0253 | 0.059* | |
| C19 | 0.5712 (2) | 0.7785 (2) | 0.07652 (11) | 0.0473 (5) | |
| H19A | 0.5761 | 0.8220 | 0.1213 | 0.057* | |
| C20 | 0.66531 (18) | 0.6798 (2) | 0.06802 (10) | 0.0407 (4) | |
| H20A | 0.7323 | 0.6583 | 0.1076 | 0.049* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0388 (3) | 0.0601 (4) | 0.0317 (3) | 0.0035 (2) | 0.0097 (2) | −0.0043 (2) |
| N1 | 0.0350 (8) | 0.0381 (8) | 0.0275 (8) | 0.0007 (6) | 0.0037 (6) | 0.0011 (6) |
| N2 | 0.0454 (9) | 0.0529 (11) | 0.0315 (9) | −0.0075 (8) | 0.0002 (7) | 0.0006 (7) |
| O1 | 0.1060 (14) | 0.0885 (13) | 0.0440 (9) | 0.0542 (11) | −0.0236 (9) | −0.0251 (9) |
| O2 | 0.0547 (9) | 0.0492 (8) | 0.0477 (8) | −0.0111 (7) | 0.0076 (7) | 0.0070 (7) |
| O3 | 0.0678 (11) | 0.0909 (13) | 0.0368 (9) | 0.0228 (9) | 0.0033 (8) | −0.0118 (8) |
| O4 | 0.0579 (10) | 0.1064 (15) | 0.0429 (9) | 0.0081 (10) | −0.0167 (7) | −0.0144 (9) |
| C1 | 0.0895 (19) | 0.0787 (18) | 0.0430 (13) | 0.0247 (16) | −0.0275 (13) | −0.0115 (13) |
| C2 | 0.0528 (14) | 0.0937 (19) | 0.0517 (15) | 0.0275 (13) | −0.0073 (11) | −0.0008 (14) |
| C3 | 0.0848 (19) | 0.110 (2) | 0.0542 (15) | 0.0532 (18) | −0.0095 (14) | −0.0240 (15) |
| C4 | 0.0414 (10) | 0.0460 (11) | 0.0341 (10) | 0.0044 (9) | 0.0030 (8) | −0.0063 (8) |
| C5 | 0.0375 (10) | 0.0409 (10) | 0.0371 (10) | 0.0039 (8) | 0.0053 (8) | −0.0030 (8) |
| C6 | 0.0344 (9) | 0.0517 (12) | 0.0361 (10) | −0.0022 (8) | 0.0089 (8) | −0.0026 (9) |
| C7 | 0.0385 (10) | 0.0431 (11) | 0.0343 (10) | −0.0003 (8) | 0.0117 (8) | −0.0009 (8) |
| C8 | 0.0308 (9) | 0.0395 (10) | 0.0319 (9) | 0.0018 (7) | 0.0046 (7) | 0.0029 (7) |
| C9 | 0.0346 (9) | 0.0489 (11) | 0.0327 (10) | 0.0020 (8) | 0.0063 (8) | 0.0032 (8) |
| C10 | 0.0580 (13) | 0.0588 (14) | 0.0378 (11) | −0.0007 (11) | 0.0092 (10) | 0.0130 (10) |
| C11 | 0.0672 (15) | 0.0487 (13) | 0.0548 (14) | 0.0000 (11) | 0.0081 (12) | 0.0148 (11) |
| C12 | 0.0561 (13) | 0.0403 (11) | 0.0521 (13) | 0.0026 (10) | 0.0051 (10) | 0.0026 (9) |
| C13 | 0.0421 (10) | 0.0447 (11) | 0.0364 (10) | 0.0030 (8) | 0.0073 (8) | 0.0008 (8) |
| C14 | 0.0409 (10) | 0.0398 (10) | 0.0283 (9) | 0.0005 (8) | 0.0051 (8) | −0.0004 (7) |
| C15 | 0.0367 (9) | 0.0328 (9) | 0.0313 (9) | −0.0058 (7) | 0.0076 (7) | 0.0035 (7) |
| C16 | 0.0381 (10) | 0.0376 (10) | 0.0326 (9) | −0.0074 (8) | 0.0058 (8) | 0.0015 (7) |
| C17 | 0.0363 (10) | 0.0487 (12) | 0.0455 (12) | 0.0000 (9) | 0.0023 (9) | 0.0044 (9) |
| C18 | 0.0438 (11) | 0.0492 (12) | 0.0552 (13) | 0.0075 (9) | 0.0131 (10) | −0.0008 (10) |
| C19 | 0.0511 (12) | 0.0504 (12) | 0.0401 (11) | 0.0016 (9) | 0.0119 (9) | −0.0048 (9) |
| C20 | 0.0422 (10) | 0.0443 (11) | 0.0327 (10) | 0.0019 (8) | 0.0047 (8) | −0.0008 (8) |
Geometric parameters (Å, °)
| S1—C9 | 1.769 (2) | C8—C13 | 1.384 (3) |
| S1—C5 | 1.854 (2) | C8—C9 | 1.402 (3) |
| N1—C7 | 1.361 (2) | C9—C10 | 1.396 (3) |
| N1—C8 | 1.433 (2) | C10—C11 | 1.369 (3) |
| N1—C14 | 1.466 (2) | C10—H10A | 0.9300 |
| N2—O3 | 1.215 (2) | C11—C12 | 1.383 (3) |
| N2—O4 | 1.216 (2) | C11—H11A | 0.9300 |
| N2—C16 | 1.470 (2) | C12—C13 | 1.376 (3) |
| O1—C4 | 1.336 (3) | C12—H12A | 0.9300 |
| O1—C1 | 1.368 (3) | C13—H13A | 0.9300 |
| O2—C7 | 1.228 (2) | C14—C15 | 1.518 (3) |
| C1—C2 | 1.272 (4) | C14—H14A | 0.9700 |
| C1—H1A | 0.9300 | C14—H14B | 0.9700 |
| C2—C3 | 1.419 (4) | C15—C20 | 1.389 (3) |
| C2—H2A | 0.9300 | C15—C16 | 1.401 (2) |
| C3—C4 | 1.319 (3) | C16—C17 | 1.384 (3) |
| C3—H3A | 0.9300 | C17—C18 | 1.374 (3) |
| C4—C5 | 1.482 (3) | C17—H17A | 0.9300 |
| C5—C6 | 1.526 (3) | C18—C19 | 1.370 (3) |
| C5—H5A | 0.9800 | C18—H18A | 0.9300 |
| C6—C7 | 1.506 (3) | C19—C20 | 1.382 (3) |
| C6—H6A | 0.9700 | C19—H19A | 0.9300 |
| C6—H6B | 0.9700 | C20—H20A | 0.9300 |
| C9—S1—C5 | 102.48 (9) | C10—C9—S1 | 119.28 (15) |
| C7—N1—C8 | 122.04 (15) | C8—C9—S1 | 122.32 (15) |
| C7—N1—C14 | 118.29 (15) | C11—C10—C9 | 121.33 (19) |
| C8—N1—C14 | 119.33 (14) | C11—C10—H10A | 119.3 |
| O3—N2—O4 | 122.38 (17) | C9—C10—H10A | 119.3 |
| O3—N2—C16 | 119.38 (16) | C10—C11—C12 | 119.9 (2) |
| O4—N2—C16 | 118.24 (18) | C10—C11—H11A | 120.1 |
| C4—O1—C1 | 107.33 (19) | C12—C11—H11A | 120.1 |
| C2—C1—O1 | 110.6 (2) | C13—C12—C11 | 119.8 (2) |
| C2—C1—H1A | 124.7 | C13—C12—H12A | 120.1 |
| O1—C1—H1A | 124.7 | C11—C12—H12A | 120.1 |
| C1—C2—C3 | 106.1 (2) | C12—C13—C8 | 120.85 (19) |
| C1—C2—H2A | 127.0 | C12—C13—H13A | 119.6 |
| C3—C2—H2A | 127.0 | C8—C13—H13A | 119.6 |
| C4—C3—C2 | 107.9 (2) | N1—C14—C15 | 114.53 (15) |
| C4—C3—H3A | 126.0 | N1—C14—H14A | 108.6 |
| C2—C3—H3A | 126.0 | C15—C14—H14A | 108.6 |
| C3—C4—O1 | 108.01 (19) | N1—C14—H14B | 108.6 |
| C3—C4—C5 | 135.4 (2) | C15—C14—H14B | 108.6 |
| O1—C4—C5 | 116.57 (17) | H14A—C14—H14B | 107.6 |
| C4—C5—C6 | 111.12 (15) | C20—C15—C16 | 115.38 (17) |
| C4—C5—S1 | 112.40 (14) | C20—C15—C14 | 120.58 (16) |
| C6—C5—S1 | 111.43 (13) | C16—C15—C14 | 124.03 (16) |
| C4—C5—H5A | 107.2 | C17—C16—C15 | 122.67 (17) |
| C6—C5—H5A | 107.2 | C17—C16—N2 | 115.49 (17) |
| S1—C5—H5A | 107.2 | C15—C16—N2 | 121.83 (17) |
| C7—C6—C5 | 112.73 (15) | C18—C17—C16 | 119.67 (18) |
| C7—C6—H6A | 109.0 | C18—C17—H17A | 120.2 |
| C5—C6—H6A | 109.0 | C16—C17—H17A | 120.2 |
| C7—C6—H6B | 109.0 | C19—C18—C17 | 119.42 (19) |
| C5—C6—H6B | 109.0 | C19—C18—H18A | 120.3 |
| H6A—C6—H6B | 107.8 | C17—C18—H18A | 120.3 |
| O2—C7—N1 | 120.66 (17) | C18—C19—C20 | 120.44 (19) |
| O2—C7—C6 | 121.97 (17) | C18—C19—H19A | 119.8 |
| N1—C7—C6 | 117.35 (17) | C20—C19—H19A | 119.8 |
| C13—C8—C9 | 119.62 (17) | C19—C20—C15 | 122.40 (18) |
| C13—C8—N1 | 119.29 (16) | C19—C20—H20A | 118.8 |
| C9—C8—N1 | 121.09 (16) | C15—C20—H20A | 118.8 |
| C10—C9—C8 | 118.34 (18) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C2—H2A···O2i | 0.93 | 2.49 | 3.401 (3) | 168 |
| C12—H12A···O2ii | 0.93 | 2.59 | 3.381 (3) | 144 |
Symmetry codes: (i) −x+5/2, y−1/2, −z+1/2; (ii) x, y−1, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5112).
References
- Bruker (2000). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Martinez, A., Alonso, M., Castro, A., Perez, C. & Moreno, F. J. (2002). J. Med. Chem. 45, 1292–1299. [DOI] [PubMed]
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052098/xu5112sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052098/xu5112Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

