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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 18;67(Pt 1):o168. doi: 10.1107/S1600536810052098

2-(Furan-2-yl)-5-(2-nitro­benz­yl)-2,3-dihydro-1,5-benzothia­zepin-4(5H)-one

Zhao-Hui Huang a, Yong Chu a, De-Yong Ye a,*
PMCID: PMC3050135  PMID: 21522675

Abstract

The title compound, C20H16N2O4S, was prepared by introduction of a 2-nitro­benzyl group to 2-(furan-2-yl)-2,3-dihydro-1,5-benzothia­zepin-4(5H)-one via an alkaline-catalysed reaction. The thia­zepine ring adopts a twist-boat conformation. The furan ring is oriented at dihedral angles of 56.75 (14) and 10.82 (14)° with respect to the two benzene rings, while the two benzene rings make a dihedral angle of 62.96 (10)°. Weak inter­molecular C—H⋯O hydrogen bonds occur in the crystal structure.

Related literature

The title compound was prepared as part of an investigation of novel GSK 3β inhibitors. For applications of non-ATP competitive glycogen synthase kinase 3β(GSK 3β) inhibitors, see: Martinez et al. (2002).graphic file with name e-67-0o168-scheme1.jpg

Experimental

Crystal data

  • C20H16N2O4S

  • M r = 380.41

  • Monoclinic, Inline graphic

  • a = 11.061 (3) Å

  • b = 8.538 (3) Å

  • c = 19.340 (6) Å

  • β = 105.535 (4)°

  • V = 1759.7 (9) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.21 mm−1

  • T = 293 K

  • 0.18 × 0.16 × 0.14 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.963, T max = 0.971

  • 7699 measured reflections

  • 3458 independent reflections

  • 2755 reflections with I > 2σ(I)

  • R int = 0.038

Refinement

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.140

  • S = 1.10

  • 3458 reflections

  • 244 parameters

  • 12 restraints

  • H-atom parameters constrained

  • Δρmax = 0.32 e Å−3

  • Δρmin = −0.34 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052098/xu5112sup1.cif

e-67-0o168-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052098/xu5112Isup2.hkl

e-67-0o168-Isup2.hkl (169.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C2—H2A⋯O2i 0.93 2.49 3.401 (3) 168
C12—H12A⋯O2ii 0.93 2.59 3.381 (3) 144

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors acknowledge Dr Z. Chen for fruitful discussions and the Department of Chemistry, Fudan University, for the data collection.

supplementary crystallographic information

Comment

Non-ATP competitive glycogen synthase kinase 3β(GSK 3β) inhibitors might have therapeutic potential for the treatment of diabetes, Alzheimer's disease and cancer (Martinez et al., 2002). The title compound, 5-(2-nitrobenzyl)-2-(furan-2-yl)-2,3-[b][1,4]thiazepin-4(5H)-one(I), was obtained in our research for novel GSK 3β inhibitors. We report here the crystal structure of the title compound in order to study the relationship between its structure and GSK 3β inhibitory activity.

The molecular structure of the title compound presented on Fig.1. In the crystal structure, the thiazepine ring adopts a similar boat form, while the dihedral angles between the furan ring and the C8>C13, C15>C20 benzene rings are 56.7° and 10.7°, respectively. The dihedral angle between C8>C13 and C15>C20 benzene rings is 63.0°. The crystal packing is stabilized by C—H···O and C—H···N hydrogen bonds (Table 1).

Experimental

A mixture of 2-(furan-2-yl)-2,3-dihydro-1,5-benzothiazepin-4(5H)-one (495 mg, 2 mmol) and 60% sodium hydride (240 mg, 6 mmol) in dry N,N-dimethylformamide (8 ml) was stirred in ice water bath for 30 minutes, then a solution of 1-(bromomethyl)-2-nitrobenzene (864 mg, 6 mmol) in dry N,N-Dimethylformamide (6 ml) was added and the resulted mixture was stirred for another 30 minutes. The target compound was extracted by ethyl acetate. After the ethyl acetate evaporated in vacuo, the residue was purified by silica gel column chromatography (petroleum ether / ethyl acetate = 10 / 3) to afford 577 mg of (I), yield 76%. Recrystallization from methanol gave light yellow crystals.

Refinement

All H atoms were placed in the idealized positions with C—H = 0.93–0.97 Å, and with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing displacemment ellipsoids at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius.

Crystal data

C20H16N2O4S F(000) = 792
Mr = 380.41 Dx = 1.436 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 1000 reflections
a = 11.061 (3) Å θ = 2.6–26.7°
b = 8.538 (3) Å µ = 0.21 mm1
c = 19.340 (6) Å T = 293 K
β = 105.535 (4)° Block, light-yellow
V = 1759.7 (9) Å3 0.18 × 0.16 × 0.14 mm
Z = 4

Data collection

Bruker SMART CCD area-detector diffractometer 3458 independent reflections
Radiation source: fine-focus sealed tube 2755 reflections with I > 2σ(I)
graphite Rint = 0.038
φ and ω scans θmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −13→13
Tmin = 0.963, Tmax = 0.971 k = −9→10
7699 measured reflections l = −23→16

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140 H-atom parameters constrained
S = 1.10 w = 1/[σ2(Fo2) + (0.0823P)2 + 0.133P] where P = (Fo2 + 2Fc2)/3
3458 reflections (Δ/σ)max < 0.001
244 parameters Δρmax = 0.32 e Å3
12 restraints Δρmin = −0.34 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.88992 (5) 0.50517 (6) 0.22528 (3) 0.04348 (19)
N1 0.86748 (14) 0.47987 (17) 0.06247 (8) 0.0344 (4)
N2 0.54187 (16) 0.5826 (2) −0.12646 (8) 0.0452 (4)
O1 1.1607 (2) 0.6320 (2) 0.34025 (9) 0.0879 (7)
O2 0.95960 (14) 0.70935 (17) 0.05012 (8) 0.0517 (4)
O3 0.62377 (17) 0.5009 (2) −0.13854 (8) 0.0672 (5)
O4 0.44565 (16) 0.6131 (2) −0.17221 (9) 0.0748 (5)
C1 1.2646 (3) 0.5769 (3) 0.38975 (14) 0.0791 (9)
H1A 1.2950 0.6160 0.4360 0.095*
C2 1.3141 (2) 0.4647 (4) 0.36370 (14) 0.0702 (7)
H2A 1.3846 0.4070 0.3869 0.084*
C3 1.2399 (3) 0.4454 (4) 0.29201 (15) 0.0882 (10)
H3A 1.2542 0.3736 0.2589 0.106*
C4 1.14695 (19) 0.5473 (2) 0.28057 (10) 0.0419 (5)
C5 1.04068 (17) 0.5900 (2) 0.21861 (10) 0.0394 (4)
H5A 1.0320 0.7042 0.2191 0.047*
C6 1.06808 (18) 0.5463 (2) 0.14781 (10) 0.0408 (5)
H6A 1.1432 0.6006 0.1442 0.049*
H6B 1.0844 0.4347 0.1476 0.049*
C7 0.96163 (17) 0.5866 (2) 0.08346 (10) 0.0383 (4)
C8 0.86766 (16) 0.3349 (2) 0.09979 (9) 0.0348 (4)
C9 0.87861 (17) 0.3321 (2) 0.17369 (10) 0.0393 (4)
C10 0.8751 (2) 0.1872 (3) 0.20661 (12) 0.0523 (5)
H10A 0.8841 0.1833 0.2558 0.063*
C11 0.8586 (2) 0.0509 (3) 0.16798 (13) 0.0585 (6)
H11A 0.8519 −0.0438 0.1904 0.070*
C12 0.8520 (2) 0.0544 (3) 0.09558 (13) 0.0513 (5)
H12A 0.8435 −0.0384 0.0695 0.062*
C13 0.85800 (18) 0.1954 (2) 0.06219 (11) 0.0417 (5)
H13A 0.8555 0.1970 0.0138 0.050*
C14 0.77070 (18) 0.5078 (2) −0.00482 (10) 0.0371 (4)
H14A 0.7365 0.4077 −0.0245 0.045*
H14B 0.8098 0.5556 −0.0389 0.045*
C15 0.66344 (16) 0.6118 (2) 0.00252 (9) 0.0339 (4)
C16 0.55868 (17) 0.6482 (2) −0.05424 (9) 0.0368 (4)
C17 0.46416 (19) 0.7472 (2) −0.04634 (11) 0.0452 (5)
H17A 0.3964 0.7693 −0.0854 0.054*
C18 0.4709 (2) 0.8125 (2) 0.01949 (12) 0.0494 (5)
H18A 0.4080 0.8794 0.0253 0.059*
C19 0.5712 (2) 0.7785 (2) 0.07652 (11) 0.0473 (5)
H19A 0.5761 0.8220 0.1213 0.057*
C20 0.66531 (18) 0.6798 (2) 0.06802 (10) 0.0407 (4)
H20A 0.7323 0.6583 0.1076 0.049*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0388 (3) 0.0601 (4) 0.0317 (3) 0.0035 (2) 0.0097 (2) −0.0043 (2)
N1 0.0350 (8) 0.0381 (8) 0.0275 (8) 0.0007 (6) 0.0037 (6) 0.0011 (6)
N2 0.0454 (9) 0.0529 (11) 0.0315 (9) −0.0075 (8) 0.0002 (7) 0.0006 (7)
O1 0.1060 (14) 0.0885 (13) 0.0440 (9) 0.0542 (11) −0.0236 (9) −0.0251 (9)
O2 0.0547 (9) 0.0492 (8) 0.0477 (8) −0.0111 (7) 0.0076 (7) 0.0070 (7)
O3 0.0678 (11) 0.0909 (13) 0.0368 (9) 0.0228 (9) 0.0033 (8) −0.0118 (8)
O4 0.0579 (10) 0.1064 (15) 0.0429 (9) 0.0081 (10) −0.0167 (7) −0.0144 (9)
C1 0.0895 (19) 0.0787 (18) 0.0430 (13) 0.0247 (16) −0.0275 (13) −0.0115 (13)
C2 0.0528 (14) 0.0937 (19) 0.0517 (15) 0.0275 (13) −0.0073 (11) −0.0008 (14)
C3 0.0848 (19) 0.110 (2) 0.0542 (15) 0.0532 (18) −0.0095 (14) −0.0240 (15)
C4 0.0414 (10) 0.0460 (11) 0.0341 (10) 0.0044 (9) 0.0030 (8) −0.0063 (8)
C5 0.0375 (10) 0.0409 (10) 0.0371 (10) 0.0039 (8) 0.0053 (8) −0.0030 (8)
C6 0.0344 (9) 0.0517 (12) 0.0361 (10) −0.0022 (8) 0.0089 (8) −0.0026 (9)
C7 0.0385 (10) 0.0431 (11) 0.0343 (10) −0.0003 (8) 0.0117 (8) −0.0009 (8)
C8 0.0308 (9) 0.0395 (10) 0.0319 (9) 0.0018 (7) 0.0046 (7) 0.0029 (7)
C9 0.0346 (9) 0.0489 (11) 0.0327 (10) 0.0020 (8) 0.0063 (8) 0.0032 (8)
C10 0.0580 (13) 0.0588 (14) 0.0378 (11) −0.0007 (11) 0.0092 (10) 0.0130 (10)
C11 0.0672 (15) 0.0487 (13) 0.0548 (14) 0.0000 (11) 0.0081 (12) 0.0148 (11)
C12 0.0561 (13) 0.0403 (11) 0.0521 (13) 0.0026 (10) 0.0051 (10) 0.0026 (9)
C13 0.0421 (10) 0.0447 (11) 0.0364 (10) 0.0030 (8) 0.0073 (8) 0.0008 (8)
C14 0.0409 (10) 0.0398 (10) 0.0283 (9) 0.0005 (8) 0.0051 (8) −0.0004 (7)
C15 0.0367 (9) 0.0328 (9) 0.0313 (9) −0.0058 (7) 0.0076 (7) 0.0035 (7)
C16 0.0381 (10) 0.0376 (10) 0.0326 (9) −0.0074 (8) 0.0058 (8) 0.0015 (7)
C17 0.0363 (10) 0.0487 (12) 0.0455 (12) 0.0000 (9) 0.0023 (9) 0.0044 (9)
C18 0.0438 (11) 0.0492 (12) 0.0552 (13) 0.0075 (9) 0.0131 (10) −0.0008 (10)
C19 0.0511 (12) 0.0504 (12) 0.0401 (11) 0.0016 (9) 0.0119 (9) −0.0048 (9)
C20 0.0422 (10) 0.0443 (11) 0.0327 (10) 0.0019 (8) 0.0047 (8) −0.0008 (8)

Geometric parameters (Å, °)

S1—C9 1.769 (2) C8—C13 1.384 (3)
S1—C5 1.854 (2) C8—C9 1.402 (3)
N1—C7 1.361 (2) C9—C10 1.396 (3)
N1—C8 1.433 (2) C10—C11 1.369 (3)
N1—C14 1.466 (2) C10—H10A 0.9300
N2—O3 1.215 (2) C11—C12 1.383 (3)
N2—O4 1.216 (2) C11—H11A 0.9300
N2—C16 1.470 (2) C12—C13 1.376 (3)
O1—C4 1.336 (3) C12—H12A 0.9300
O1—C1 1.368 (3) C13—H13A 0.9300
O2—C7 1.228 (2) C14—C15 1.518 (3)
C1—C2 1.272 (4) C14—H14A 0.9700
C1—H1A 0.9300 C14—H14B 0.9700
C2—C3 1.419 (4) C15—C20 1.389 (3)
C2—H2A 0.9300 C15—C16 1.401 (2)
C3—C4 1.319 (3) C16—C17 1.384 (3)
C3—H3A 0.9300 C17—C18 1.374 (3)
C4—C5 1.482 (3) C17—H17A 0.9300
C5—C6 1.526 (3) C18—C19 1.370 (3)
C5—H5A 0.9800 C18—H18A 0.9300
C6—C7 1.506 (3) C19—C20 1.382 (3)
C6—H6A 0.9700 C19—H19A 0.9300
C6—H6B 0.9700 C20—H20A 0.9300
C9—S1—C5 102.48 (9) C10—C9—S1 119.28 (15)
C7—N1—C8 122.04 (15) C8—C9—S1 122.32 (15)
C7—N1—C14 118.29 (15) C11—C10—C9 121.33 (19)
C8—N1—C14 119.33 (14) C11—C10—H10A 119.3
O3—N2—O4 122.38 (17) C9—C10—H10A 119.3
O3—N2—C16 119.38 (16) C10—C11—C12 119.9 (2)
O4—N2—C16 118.24 (18) C10—C11—H11A 120.1
C4—O1—C1 107.33 (19) C12—C11—H11A 120.1
C2—C1—O1 110.6 (2) C13—C12—C11 119.8 (2)
C2—C1—H1A 124.7 C13—C12—H12A 120.1
O1—C1—H1A 124.7 C11—C12—H12A 120.1
C1—C2—C3 106.1 (2) C12—C13—C8 120.85 (19)
C1—C2—H2A 127.0 C12—C13—H13A 119.6
C3—C2—H2A 127.0 C8—C13—H13A 119.6
C4—C3—C2 107.9 (2) N1—C14—C15 114.53 (15)
C4—C3—H3A 126.0 N1—C14—H14A 108.6
C2—C3—H3A 126.0 C15—C14—H14A 108.6
C3—C4—O1 108.01 (19) N1—C14—H14B 108.6
C3—C4—C5 135.4 (2) C15—C14—H14B 108.6
O1—C4—C5 116.57 (17) H14A—C14—H14B 107.6
C4—C5—C6 111.12 (15) C20—C15—C16 115.38 (17)
C4—C5—S1 112.40 (14) C20—C15—C14 120.58 (16)
C6—C5—S1 111.43 (13) C16—C15—C14 124.03 (16)
C4—C5—H5A 107.2 C17—C16—C15 122.67 (17)
C6—C5—H5A 107.2 C17—C16—N2 115.49 (17)
S1—C5—H5A 107.2 C15—C16—N2 121.83 (17)
C7—C6—C5 112.73 (15) C18—C17—C16 119.67 (18)
C7—C6—H6A 109.0 C18—C17—H17A 120.2
C5—C6—H6A 109.0 C16—C17—H17A 120.2
C7—C6—H6B 109.0 C19—C18—C17 119.42 (19)
C5—C6—H6B 109.0 C19—C18—H18A 120.3
H6A—C6—H6B 107.8 C17—C18—H18A 120.3
O2—C7—N1 120.66 (17) C18—C19—C20 120.44 (19)
O2—C7—C6 121.97 (17) C18—C19—H19A 119.8
N1—C7—C6 117.35 (17) C20—C19—H19A 119.8
C13—C8—C9 119.62 (17) C19—C20—C15 122.40 (18)
C13—C8—N1 119.29 (16) C19—C20—H20A 118.8
C9—C8—N1 121.09 (16) C15—C20—H20A 118.8
C10—C9—C8 118.34 (18)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C2—H2A···O2i 0.93 2.49 3.401 (3) 168
C12—H12A···O2ii 0.93 2.59 3.381 (3) 144

Symmetry codes: (i) −x+5/2, y−1/2, −z+1/2; (ii) x, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5112).

References

  1. Bruker (2000). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Martinez, A., Alonso, M., Castro, A., Perez, C. & Moreno, F. J. (2002). J. Med. Chem. 45, 1292–1299. [DOI] [PubMed]
  3. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052098/xu5112sup1.cif

e-67-0o168-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052098/xu5112Isup2.hkl

e-67-0o168-Isup2.hkl (169.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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