Table 1. Pyrosequenced cDNAs analyzed in this study.

	Sample A	Sample B	Sample C	Sample D	Sample E	Sample F	Sample K	Sample L	Sample N	Sample O
Total number of reads	57,300	48,150	34,849	19,625	17,891	22,748	69,100	75,059	35,276	29,505
Total base pairs, Mb	10.7	8.4	6.6	5.1	4.3	4.6	15.3	16.4	7.5	6.4
SSU rRNA reads	11,528	4,524	7,726	6,663	5,585	3,221	12,707	8,024	6,482	6,057
LSU rRNA reads	43,622	41,888	25,359	11,896	10,948	16,494	52,981	59,935	24,587	21,353
Non rRNA reads	2,150	1,738	1,764	1,066	1,358	3,033	3,412	7,100	4,207	2,095

Only sequences longer than 60 bp were considered.