Supp. Table S3.

Genotyping information NRY SNPs

Additional	Haplogroup	SNP	Bibliogr aphical source	GenBank	dbSNPs accession (if known)	Position Y-chromosome	Forward Amplification primer (5′–> 3′)	Reverse Amplification primer (5′–> 3′)	concentration in PCR (μM)	Amplic on size (bp)	Minisequencing primers (target-specific sequence in capitals)	Orientation	concentration in miniseqreaction (μM)	Primer size (nt)	Mutation: Wildtype/Mutant**
hgE	E	M96	Refs	AC010889	rs9306841	20238386	GCCAGCCAAGAATGAAGAGA	TGAGCTGTGATGTGTAACTTGG	0.1	143	GGAAAACAGGTCTCTCATAATA	R	0.04	22	G/C
hgE	E1a	M33	2	AC009977		20199838	CCGTCATAGGCTGAGACAAGA	CCCCAAGAGAGACAACTGAC	0.15	150	ccacgtcgtgaaagtctgacaaCAGTTACAAAAGTATAATATGTCTGAGAT	R	0.06	51	C/G
hgE	E1b1	P2	3	AC010137		20070219	GAGAATCAGCTCCAGCCATC	TTTTGGATCTTCATGCTGGTT	0.03	100	gacaaAGGTGCCCCTAGGAGGAGAA	F	0.2	25	T/C
hgE	E1b1a	M2	6	AC011302	rs3893	12606580	ACGGAAGGAGTTCTAAAATTCAGG	AAAATACAGCTCCCCCTTTATCCT	0.1	147	cacgtcgtgaaagtctgacaaTTCATTGTTAACAAAAGTCC	R	0.06	41	G/A
hgE	E1b1a4	M154	2	AC010889		20352065	AGGCTACAAATTAGTGCGACA	GAGGCACAGATACTTAAACCATTG	0.06	77	acaaGTTACATGGCCTATAATATTCAGTACA	R	0.03	31	G/A
hgE	E1b1a7	M191	2	AC004474	rs2032590	13529007	AAAAATGGAGTGTTTATCAGAGCTT	CCCAGACACACCAAAATATCTC	0.3	122	gaaagtctgacaaAAAATATCTCATATTTTCAT	R	0.25	33	A/G
hgE	E1b1b	M215	2	AC006376	rs2032654	13977218	TCAAACTGTTGGTAAATTTTAGAGAAA	CAGAAGCATCAGCTGGAACA	0.25	97	gtcgtgaaagtctgacaaCAGCTGGAACAGTTAGAAAG	R	0.15	38	C/T
hgE	E1b1b1	M35	2	AC009977	rs1179188	20201091	AGGGCATGGTCCCTTTCTAT	TCCATGCAGACTTTCGGAGT	0.2	96	actgactaaactaggtgccacgtcgtgaaagtctgacaaTCGGAGTCTCTGCCTGTGTC	R	0.06	59	G/A
hgE	E1b1b1a	M78*	2	AC010889		20352691	TGCATTACTCCGTATGTTCGAC	TGGAAGCTTACCATCTTTTTATGA	0.05*	132	aagtctgacaaCTTATTTTGAAATATTTGGAAGGGC	R	0.02	36	A/C
hgE	E1b1b1a1	V12	7	AC012068		6883099	CTGAGTTGGATTGTTTTAAGTTGA	TTGGTCTCTCTTCATGTGCTG	0.15	150	acaaTTGTGTAGATAATTCAAAGT	R	0.25	24	C/T
hgE	E1b1b1a1a	M224	2	AC010889		20352687	TGCATTACTCCGTATGTTCGAC	TGGAAGCTTACCATCTTTTTATGA	0.05*	132	cgtgaaagtctgacaaAATTGATACACTTAACAAAGATACTTC	F	0.15	43	A/G
hgE	E1b1b1a1b	V32	7	AC012068		6992821	GCAAATGTTCCATGAATGGTG	CCAGCCAGAGAGGCACTTTA	0.4	111	CCCaactgactaaactaggtgccacgtcgtgaaagtctgacaaCACACATGTATATACACACC	R	0.25	63	C/G
hgE	E1b1b1a2	V13	7	AC012068		6902263	CAACAGTGGAGGACAAAGCA	AAGACCAGCCTGACCAACAT	0.15	106	cgtcgtgaaagtctgacaaGCTCAAACTTCCCTTG	R	0.15	35	A/G
hgE	E1b1b1a3	V22	7	AC012068		6919957	TGGCAATGCCTCAACTTACA	ATTCCCCAAGGTTTCAGAGG	0.15	110	CaactgactaaactaggtgccacgtcgtgaaagtctgacaaCCAAGGTTTCAGAGGTC	R	0.15	58	C/G
hgE	E1b1b1b	M81	2	AC010889	rs2032640	20351960	GCACTATCATACTCAGCTACACATCTC	TTGTTTCTTCTTGGTTTGTGTGA	0.03	99	acaaCTTGGTTTGTGTGAGTATACTCTATGAC	R	0.03	32	G/A
hgE	E1b1b1c	M123	2	AC010889		20223974	GTTGCCCAGGAATTTGCAT	CACAGAGCAAGTGACTCTCAAAG	0.15	89	taaactaggtgccacgtcgtgaaagtctgacaaCATTTCTAGGTATTCAGGCGATG	F	0.1	56	T/G
hgE	E1b1b1d	M281	4	AC010889	rs13447370	20223888	AGCAAAGTTGAGGTTGCACA	TGGGCAACACCAGAATCTAA	0.15	93	gtgccacgtcgtgaaagtctgacaaGCACAAACTCAGTATTATTAAAC	F	0.06	48	T/C
hgE	E1b1b1e	V6	3	AC012068		6992007	GATGGCACAGTGTTCGACAG	CTTCTCTCCAAATGCCTGCT	0.4	102	taggtgccacgtcgtgaaagtctgacaaCCTGCTGCCGCATCTGCA	R	0.02	46	T/C
hgE	E2	M75	2	AC010889	rs2032639	20349565	TGACTTGTCAAAAGCCAAAACA	TTGAACAGAGGCATTTGTGA	0.1	123	taggtgccacgtcgtgaaagtctgacaaGAAAAGACAATTATCAAACCACATCC	F	0.1	54	C/T