Table 1.
Nucleosomal X-ray crystal structures
Variant/Ligand | Histone species | DNA length | DNA sequence | References |
---|---|---|---|---|
NCPs differing in histone content | ||||
Major histones | Frog | 146 | α-satellite | [13,25] |
Major histones | Chicken | 146 | α-satellite | [55] |
Major histones | Yeast | 146 | α-satellite | [56] |
Major histones | Human | 146 | α-satellite | [57] |
Major histones | Fly | 147 | α-satellite | [58] |
H2A.Z | Frog/Mouse | 146 | α-satellite | [59] |
macroH2A | Mouse/Human | 146 | α-satellite | [60] |
H3T | Human | 146 | α-satellite | [61] |
Sin mutants | Frog | 146 | α-satellite | [62] |
Methylated H3/H4 | Frog | 146 | α-satellite | [63] |
H3K56Q/E | Frog | 146 | α-satellite | [64] |
NCPs differing in DNA fragment | ||||
Distinct sequence | Frog | 146 | α-satellite (type 2) | [25] |
Length | Frog | 147 | α-satellite | [25,26] |
Length | Frog | 145 | α-satellite | [27] |
A16, MRE | Frog | 147 | α-satellite-based* | [65] |
TTTAA elements | Frog | 147 | α-satellite-based | [39] |
Strong positioning | Frog | 145 | 601* | [24] |
NCP in complex with small molecules | ||||
Polyamides | Frog | 146 | α-satellite | [14] |
Polyamide dimer | Frog | 146 | α-satellite | [15] |
LANA peptide | Frog | 146 | α-satellite | [20] |
Platinum drugs | Frog | 147 | α-satellite | [41] |
Intercalating agent | Frog | 145 | α-satellite | [29] |
MnCl2, MnSO4 | Frog | 147 | α-satellite | [49,50] |
Co2+, Ni2+ | Frog | 147 | α-satellite | [44] |
Rb+, Cs+ | Frog | 147 | α-satellite | [44] |
NCP in complex with protein factors | ||||
RCC1 | Frog | 147 | 601* | [19] |
Higher order structure | ||||
Tetranucleosome | Frog | 694 | 601* | [53] |
Non-palindromic DNA fragments (*).