Figure 2. Physical map and annotation of the 813 kb region of the S₁, S₁A and S₁B loci in O. glaberrima cv. CG14.

Yellow, blue and red boxes represent genes, transposons and retrotransposons, respectively. TEs nested into others TEs or genes are raised above their insertion sites. Markers used in the genetic map are indicated in gray. A black arrow indicates a large sequence inversion, relative to O. sativa ssp. japonica cv. Nipponbare. Regions spanning the S₁, S₁A and S₁B loci are indicated. Roman numerals indicate duplicated gene families listed in Table 1.