Table 4. Individual gene set prediction characteristics (optimal λ by LOOCV in model building, change in deviance on test set, standard deviation for PIs).

	Prediction characteristics statistic
Gene Set	λ opt	Δ Deviance	Sd (PI)
RS	338	-1.4	0.109
SD	-	0	0
LM	-	0	0
AMST	227	0.3	0.195
ROT	1029	0.1	0.095
Grade	3580	-2.12	0.078
Robust	1705	-2.57	0.121
Hypoxia	392	-0.71	0.245
Stem	3623	-0.25	0.044
Intrinsic	1576	-0.88	0.137
WR	11261	-0.37	0.037