Table 1.
Effect of single thioxo-bonds on stability and association kinetics of the S-peptide/S-protein complex at pH 6.0, 50 mM NaOAc, 100 mM NaCl, 25 °C
Position of thioxo-bond | Keq (M-1) | ΔΔG0* (kJ/mol) | kon (·105 M-1 s-1) | ΔΔG0‡* (kJ/mol) | ϕ-value† |
WT | (3.6 ± 0.1)·106 | - | (4.4 ± 0.2)·105 | - | |
Lys1 | (1.3 ± 0.1)·106 | 2.5 | n.d. | ||
Glu2 | (1.1 ± 0.1)·106 | 2.9 | n.d. | ||
Thr3 | (6.1 ± 0.1)·104 | 10.1 | (3.0 ± 0.1)·105 | 0.90 | 0.09 |
Ala4‡ | (1.4 ± 0.1)·106 | 2.3 | (4.4 ± 0.1)·105 | 0 | - |
Lys7 | (1.3 ± 0.1)·104 | 13.9 | (4.1 ± 0.3)·105 | 0.17 | 0.01 |
Phe8§ | (6.8 ± 0.9)·103 | 15.5 | (2.2 ± 0.1)·105 | 1.7 | 0.10 |
Glu9 | (4.0 ± 0.5)·104 | 11.1 | (5.1 ± 0.4)·105 | −0.41 | −0.04 |
Arg10 | (6.5 ± 0.1)·104 | 9.9 | (4.1 ± 0.3)·105 | 0.14 | 0.01 |
His12§,¶ | (1.3 ± 0.3)·103 | 19.6 | n.d. | - | n.d. |
Ser15 | (2.9 ± 0.1)·105 | 6.2 | (3.6 ± 0.4)·105 | 0.46 | 0.07 |
*ΔΔG0 represents the difference in free energy between a variant and the WT protein, which has a ΔG0 of -37.4 kJ/mol. ΔG0 was calculated from the equilibrium constant using ΔG0 = -RT ln Keq.
†Errors in ϕ-values depend on the errors in Keq and kon as well as on ΔΔG0 and are ≤ 0.05 for the variants used for ϕ-value analysis.
‡ΔΔG0 too small to determine an accurate ϕ-value (8).
¶Thioxo His12 is strongly destabilized, which does not allow measurement of the association kinetics by stopped-flow fluorescence.