Table 1.

Plastid-targeted genes detected in the Lepidodinium chlorophorum cDNA library

Protein	Origin1)	Support2)
Plastid lipid associated protein kinase	Green algae	85
PsbO	Green algae	53
PsbP	Green algae	53
PsbR	Green algae	100
RuBisCO activase	Green algae	99
Chlorophyll a/b binding protein (several isoforms)	Green algae	<50
1-deoxy-D-xylulose 5-phosphate reductoisomerase	Peridinin dinoflagellate	100
4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Peridinin dinoflagellate	95
Ferredoxin NADP reductase	Peridinin dinoflagellate	95
RuBisCO small subunit	Streptophyte	83
Plastid-targeted GAPDH	Haptophyte
Phosphoribulokinase	Heterokont	<50
Csp41	Heterokont	84
Chloroplast stability factor hcf 136	Red algae or derivate	98
Fructose 1,6 bisphosphatase	Red algae or derivate	80
Transketolase	Red algae or derivate	95
ATP synthase gamma	Red algae or derivate	<50
Chlorophyll a/c binding protein (several isoforms)	Red algae or derivate	<50
Sedoheptulose bisphosphatase	Unresolved phylogeny
3,8 divinyl protochlorophyllide	Unresolved phylogeny
DnaJ/Hsp40	Unresolved phylogeny
Ferredoxin B	Unresolved phylogeny

1) Phylogenetic origin of the genes as inferred by RAxML 2) Bootstrap support (100 pseudoreplicates and one heuristic search for each replicate) for the phylogenetic placement.