Table 1. Common nAChR Subunit Gene Variant Associations with the FTND Score.
SNP ID | A1a | A2b | Gene | Type | MAF | Add Pc | Dom Pd |
---|---|---|---|---|---|---|---|
rs2280781 | C | T | CHRNB2 | 5′ UTR | 0.101 | 0.221 | 0.280 |
rs4845378 | G | T | CHRNB2 | Intron | 0.097 | 0.258 | 0.258 |
rs2072660 | T | C | CHRNB2 | 3′ UTR | 0.244 | 0.003 | 0.006 |
rs2072661 | G | A | CHRNB2 | 3′ UTR | 0.245 | 0.002 | 0.004 |
rs4292956 | C | T | CHRNB2 | 3′ UTR | 0.066 | 0.472 | 0.476 |
rs2472553 | G | A | CHRNA2 | Non-syn | 0.139 | 0.571 | 0.493 |
rs13277254 | G | A | CHRNB3 | Up | 0.234 | 0.829 | 0.875 |
rs13280301 | A | G | CHRNB3 | Up | 0.178 | 0.675 | 0.798 |
rs6474413 | C | T | CHRNB3 | Up | 0.232 | 0.746 | 0.702 |
rs4950 | G | A | CHRNB3 | 5′ UTR | 0.236 | 0.808 | 0.854 |
rs2304297 | G | C | CHRNA6 | 3′ UTR | 0.244 | 0.557 | 0.985 |
ss161151744 | C | T | CHRNA7 | Syn | 0.066 | 0.314 | 0.314 |
rs569207 | C | T | CHRNA5 | Intron | 0.196 | 0.134 | 0.149 |
rs16969968 | G | A | CHRNA5 | Non-syn | 0.367 | 0.433 | 0.322 |
rs615470 | T | C | CHRNA5 | 3′ UTR | 0.381 | 0.330 | 0.329 |
rs8192482 | C | T | CHRNA5 | 3′ UTR | 0.368 | 0.489 | 0.388 |
rs564585 | A | G | CHRNA5 | 3′ UTR | 0.237 | 0.080 | 0.139 |
rs12899226 | T | G | CHRNA3 | Down | 0.052 | 0.104 | 0.104 |
rs660652 | A | G | CHRNA3 | 3′ UTR | 0.383 | 0.283 | 0.329 |
rs472054 | A | G | CHRNA3 | 3′ UTR | 0.379 | 0.381 | 0.367 |
rs578776 | A | G | CHRNA3 | 3′ UTR | 0.247 | 0.053 | 0.112 |
rs1051730 | G | A | CHRNA3 | Syn | 0.367 | 0.455 | 0.359 |
rs3743075 | T | C | CHRNA3 | Syn | 0.378 | 0.292 | 0.305 |
rs3743074 | G | A | CHRNA3 | Intron | 0.378 | 0.336 | 0.324 |
rs8040868 | T | C | CHRNA3 | Syn | 0.429 | 0.981 | 0.813 |
rs8192475 | C | T | CHRNA3 | Non-syn | 0.050 | 0.094 | 0.094 |
rs12914008 | G | A | CHRNB4 | Non-syn | 0.051 | 0.100 | 0.100 |
rs3813567 | G | A | CHRNB4 | Up | 0.157 | 0.370 | 0.275 |
rs2302765 | T | C | CHRNB1 | Intron | 0.159 | 0.729 | 1.000 |
rs12452047 | A | G | CHRNB1 | Intron | 0.166 | 0.616 | 0.808 |
rs7210231 | C | A | CHRNB1 | Intron | 0.199 | 0.124 | 0.017 |
rs2302761 | C | T | CHRNB1 | Intron | 0.202 | 0.233 | 0.078 |
rs2302763 | T | C | CHRNB1 | Intron | 0.164 | 0.679 | 0.889 |
rs2302764 | T | C | CHRNB1 | 3′ UTR | 0.160 | 0.049 | 0.045 |
rs3827020 | T | C | CHRNA4 | Intron | 0.143 | 0.521 | 0.865 |
rs45442394 | G | A | CHRNA4 | Intron | 0.060 | 0.431 | 0.717 |
rs1044397 | C | T | CHRNA4 | Syn | 0.492 | 0.305 | 0.608 |
rs1044396 | G | A | CHRNA4 | Syn | 0.488 | 0.215 | 0.467 |
rs2229960 | A | G | CHRNA4 | Syn | 0.057 | 0.870 | 0.758 |
rs2229959 | C | A | CHRNA4 | Syn | 0.119 | 0.837 | 0.806 |
rs1044394 | A | G | CHRNA4 | Syn | 0.067 | 0.784 | 0.678 |
rs6090384 | T | C | CHRNA4 | Intron | 0.060 | 0.830 | 0.933 |
rs2273505 | C | T | CHRNA4 | Intron | 0.062 | 0.740 | 0.725 |
rs2273506 | G | A | CHRNA4 | Syn | 0.061 | 0.580 | 0.562 |
A1=allele 1.
A2=allele 2.
Add=additive model.
Dom=dominant model.
The bold values are for P<0.05.