Table 2. Association of Markers in GRIK4 with Treatment Response and Remission.
GRIK4 dbSNP ID |
Unipolar (n=270) |
Uni-/Bipolar (n=300a) |
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Responseb |
Remissionc |
Response |
Remission |
SNP information |
||||||||
pemp |
pemp |
|||||||||||
Genotypic | Allelic | Genotypic | Allelic | Genotypic | Allelic | Genotypic | Allelic | Alleles | Protective genotype | Function | MAF | |
rs12800734 | 0.015 | 0.047 | 0.0043 | 0.087 | 0.0035 | 0.077 | 0.0019 | NS | A/G | GG | Intron 16 | 0.45 |
rs2276319 | 0.025 | 0.045 | 0.014 | 0.084 | 0.0073 | 0.076 | 0.0067 | NS | C/T | CC | Intron 16 | 0.45 |
rs1621211 | 0.0076 | NS | 0.017 | NS | 0.0091 | NS | 0.011 | NS | A/G | AA | 5′ end | 0.26 |
rs513548 | 0.062 | NS | 0.016 | NS | 0.066 | NS | 0.011 | NS | T/G | GG | Intron 17 | 0.27 |
rs2282586 | NS | NS | 0.014 | 0.097 | NS | NS | 0.018 | NS | A/G | GG | 5′ end | 0.37 |
rs2156633 | 0.0021 | 0.048 | NS | NS | 0.0010 | 0.081 | NS | NS | A/G | GG | Intron 11 | 0.22 |
rs1944522 | 0.013 | 0.088 | NS | NS | 0.0044 | NS | NS | NS | A/G | AA | 5′ end | 0.46 |
rs1954787d | NS | NS | NS | NS | NS | NS | 0.079 | NS | C/T | CC | Intron 1 | 0.42 |
FPM (82 SNPs) | 0.088 | NS | 0.026 | NS | 0.028 | NS | 0.029 | NS |
Abbreviations: pemp, empirical p-value; NS, not significant; MAF, minor allele frequency; FPM, Fisher's product method (Fisher, 1932), gene-wise association results.
270 unipolar and 30 depressed bipolar patients.
A 50% reduction in the baseline HAM-D score after 5 weeks.
HAM-D score of <10 (21 items version) after 5 weeks.
Best GRIK4 SNP of the STAR*D study (Paddock et al, 2007).