Table 3. Association of Markers in HTR2A with Treatment Response and Remission.
| HTR2A dbSNP ID |
Unipolar (n=270) |
Uni-/Bipolar (n=305a) |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Responseb |
Remissionc |
Response |
Remission |
SNP information |
||||||||
|
pemp |
pemp |
|||||||||||
| Genotypic | Allelic | Genotypic | Allelic | Genotypic | Allelic | Genotypic | Allelic | Alleles | Prot. allele/ genotype | Function | MAF | |
| rs17288723 | NS | NS | 0.0040 | 0.046 | NS | NS | 0.0011/0.02d | 0.017 | C/T | CC | Intron 2 | 0.14 |
| rs2770297 | NS | NS | 0.028 | 0.099 | NS | NS | 0.0055 | 0.087 | C/T | CC | Intron 2 | 0.27 |
| rs2070037 | NS | NS | NS | 0.074 | NS | 0.074 | 0.027 | 0.011 | C/T | C | Intron 1 | 0.23 |
| rs2770302 | NS | NS | NS | 0.099 | NS | NS | 0.033 | 0.015 | T/A | T | Intron 1 | 0.24 |
| rs2296973 | NS | NS | 0.050 | 0.056 | NS | NS | 0.033 | 0.018 | T/G | T | Intron 1 | 0.29 |
| rs7997012e | NS | NS | NS | NS | NS | NS | NS | 0.043 | A/G | G | Intron 2 | 0.45 |
| FPM (37 SNPs) | NS | NS | NS | NS | NS | NS | 0.012 | 0.024 | ||||
Abbreviations: pemp, empirical p-value; NS, not significant; prot., protective; MAF, minor allele frequency; FPM, Fisher's product method (Fisher, 1932), gene-wise association results.
275 unipolar and 30 depressed bipolar patients.
A 50% reduction in the baseline HAM-D score after 5 weeks.
HAM-D score of <10 (21 items version) after 5 weeks.
After Westfall–Young correction for the number of SNPs tested.
Best HTR2A SNP of the STAR*D study (McMahon et al, 2006).