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. 2009 Nov 18;35(3):727–740. doi: 10.1038/npp.2009.180

Table 3. Association of Markers in HTR2A with Treatment Response and Remission.

HTR2A dbSNP ID Unipolar (n=270)
Uni-/Bipolar (n=305a)
       
  Responseb
Remissionc
Response
Remission
SNP information
  pemp
pemp
       
  Genotypic Allelic Genotypic Allelic Genotypic Allelic Genotypic Allelic Alleles Prot. allele/ genotype Function MAF
rs17288723 NS NS 0.0040 0.046 NS NS 0.0011/0.02d 0.017 C/T CC Intron 2 0.14
rs2770297 NS NS 0.028 0.099 NS NS 0.0055 0.087 C/T CC Intron 2 0.27
rs2070037 NS NS NS 0.074 NS 0.074 0.027 0.011 C/T C Intron 1 0.23
rs2770302 NS NS NS 0.099 NS NS 0.033 0.015 T/A T Intron 1 0.24
rs2296973 NS NS 0.050 0.056 NS NS 0.033 0.018 T/G T Intron 1 0.29
rs7997012e NS NS NS NS NS NS NS 0.043 A/G G Intron 2 0.45
FPM (37 SNPs) NS NS NS NS NS NS 0.012 0.024        

Abbreviations: pemp, empirical p-value; NS, not significant; prot., protective; MAF, minor allele frequency; FPM, Fisher's product method (Fisher, 1932), gene-wise association results.

a

275 unipolar and 30 depressed bipolar patients.

b

A 50% reduction in the baseline HAM-D score after 5 weeks.

c

HAM-D score of <10 (21 items version) after 5 weeks.

d

After Westfall–Young correction for the number of SNPs tested.

e

Best HTR2A SNP of the STAR*D study (McMahon et al, 2006).