Table 3.
Characterization of duplication and deletion events detected in the common N2 ancestor of all MA lines and the reference strain of N2 used for hybridization against ten mutation accumulation lines of C. elegans for CGH microarray analysis.
| Chromosome | Start Position | Stop Position | Length of Indel (bp) | No. of ORFs (complete, partial) |
|---|---|---|---|---|
| Duplications: | ||||
| Va | 2,995,387 | 2,999,015 | 3,628* | 2(0,2) |
| Vb | 18,706,963 | 18,726,320 | 19,358 | 3(2,1) |
| Vb | 19,428,007 | 19,431,266 | 3,260* | 1(0,1) |
| Xb | 86,369 | 87,002 | 634 | 1(0,1) |
| Xb | 7,510,066 | 7,523,734 | 13,668* | 1(0,1) |
| Deletion: | ||||
| Vc | 1,645,712 | 1,647,498 | 1,786* | 1(0,1) |
Quantitative PCR results confirming these duplications and deletions are presented in Supplemental Table 3. Duplication lengths with an asterisk are based on the DNA sequence of duplication and deletion breakpoints shown in Supplemental Figures 1G through J. Other length estimates are minimum estimates based on the location of probes included in the duplicated region. The numbers of ORFs were based on Wormbase sequence version WS219.
correspond to a duplication and deletion event in the common N2 ancestor of all MA lines.
corresponds to duplication events in the N2 reference strain used for the CGH microarray analysis.