|
Upregulated genes within regions of relative copy number gain
|
|
|
|
|
FXR1
|
fragile X mental retardation, autosomal homolog 1 |
3 |
182.1–182.3 |
8087 |
|
CUGBP2
|
CUG triplet repeat, RNA binding protein 2 |
10 |
11.1–11.5 |
10659 |
|
ACP2
|
acid phosphatase 2, lysosomal |
11 |
42.2–42.3 |
53 |
|
CUGBP1
|
CUG triplet repeat, RNA binding protein 1 |
11 |
47.4–47.6 |
10658 |
|
FNBP4
|
formin binding protein 4 |
11 |
47.7–47.8 |
23360 |
|
PATL1
|
protein associated with topoisomerase II homolog 1 |
11 |
59.1–59.2 |
219988 |
|
NAT11
|
N-acetyltransferase 11 (GCN5-related, putative) |
11 |
63.4–63.5 |
79829 |
|
GPR137
|
G protein-coupled receptor 137 |
11 |
63.8–63.9 |
56834 |
|
ATG2A
|
ATG2 autophagy related 2 homolog A |
11 |
64.4–64.5 |
23130 |
|
PPP2R5B
|
protein phosphatase 2, regulatory subunit B', |
11 |
64.4–64.5 |
5526 |
|
EHBP1L1
|
EH domain binding protein 1-like 1 |
11 |
65.1–65.2 |
254102 |
|
ADRBK1
|
adrenergic, beta, receptor kinase 1 |
11 |
66.7–66.9 |
156 |
|
RAD9A
|
RAD9 homolog A |
11 |
66.9–67.0 |
5883 |
|
CABP4
|
calcium binding protein 4 |
11 |
66.9–67.0 |
57010 |
|
ACY3
|
aspartoacylase 3 |
11 |
67.1–67.2 |
91703 |
|
CTTN
|
Cortactin |
11 |
66.9–67.0 |
2017 |
|
C11orf30
|
chromosome 11 open reading frame 30 |
11 |
75.8–76.0 |
56946 |
|
RAB30
|
RAB30, member RAS oncogene family |
11 |
82.3–82.5 |
27314 |
|
TMEM126B
|
transmembrane protein 126B |
11 |
85.0–85.1 |
55863 |
|
PICALM
|
phosphatidylinositol binding clathrin assembly protein |
11 |
85.3–85.5 |
8301 |
|
NEK3
|
NIMA (never in mitosis gene a)-related kinase 3 |
13 |
51.6–51.7 |
4752 |
|
UBL3
|
ubiquitin-like 3 |
13 |
29.2–29.4 |
5412 |
|
TDRD3
|
tudor domain containing 3 |
13 |
59.8–60.1 |
81550 |
|
Downregulated genes within regions of relative copy number decrease
|
|
|
|
|
RAD52
|
RAD52 homolog |
12 |
0.8–1.0 |
5893 |
|
FBXL14
|
F-box and leucine-rich repeat protein 14 |
12 |
1.5–1.6 |
144699 |
|
CACNA2D4
|
calcium channel, voltage-dependent, alpha 2/delta subunit 4 |
12 |
1.7–1.9 |
93589 |
|
ITFG2
|
integrin alpha FG-GAP repeat containing 2 |
12 |
2.7–2.9 |
55846 |
|
LRRC23
|
leucine rich repeat containing 23 |
12 |
6.8–6.9 |
10233 |
|
H3F3B
|
H3 histone, family 3B |
17 |
71.2–71.3 |
3021 |
|
SOCS3
|
suppressor of cytokine signaling 3 |
17 |
73.8–73.9 |
9021 |
|
RNF213
|
ring finger protein 213 |
17 |
75.9–76.0 |
57674 |
