Figure 4.
Uridylate kinase - adenosine monophosphate complex (PDB ID: 1UKZ). Binding geometries obtained by docking calculations compared to the experimental geometry (red sticks): a) ligand docking pose (green sticks) for the protein experimental structure (green cartoons); b) ligand docking pose (light blue sticks) for a protein model of high quality (cyan cartoons); c) ligand docking pose (yellow sticks) for a protein model of medium quality (yellow cartoons); d) ligand docking pose (blue sticks) for a protein model of low quality (blue cartoons).