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. 2010 Dec 8;286(8):6262–6271. doi: 10.1074/jbc.M110.182618

TABLE 2.

Interaction between SagUGL D175N and Δ6S

Hydrogen bonds (<3.3 Å)
van der Waals contact (C-C distance <4.5 Å)
Sugar Atom Protein Atom Distance Sugar Atom Protein Atom
Å
ΔGlcUA O-2 Asp-115 Oδ2 2.6 ΔGlcUA C-1 Trp-69 Cδ2, Cζ2, Cγ, Cδ1, Cϵ2
O-3 Asn-175 Oδ1 3.1 C-2 Asp-115
Asp-115 Oδ2 3.2 C-3 Asn-175
O-6A Arg-247 Nη2 2.7 Asp-115
O-6B Trp-251 Nϵ1 3.1 Trp-69 Cδ2, Cϵ3, Cζ3, Cη2, Cζ2, Cϵ2
Arg-247 2.9 Phe-118 Cδ1, Cϵ1
GalNAc6S O-1 Gly-233 O 2.8 C-4 Asn-175
O-4 Thr-235 Oγ1 2.5 Trp-69 Cδ2, Cϵ3, Cζ3, Cη2, Cζ2, Cϵ2
O-5 Thr-235 Oγ1 3.2 Phe-118 Cϵ1
O-7 Asp-115 Oδ1 3.0 C-5 Trp-69 Cζ3, Cη2, Cζ2, Cϵ2
O-1S Ser-365 2.9 C-6 Trp-245 Cη2, Cζ2
Ser-368 2.6 Trp-69 Cη2, Cζ2
O-2S Ser-368 3.0 Arg-247
GalNAc6S C-3 Trp-69 Cδ1
C-4 Tyr-364 Cϵ1, Cζ
C-5 Tyr-364 Cϵ1, Cζ
C-6 Thr-235 Cγ2
Tyr-364 Cϵ1, Cϵ2, Cζ
Ser-365
C-7 Trp-69 Cδ1
C-8 Trp-69 Cδ1