TABLE 2.
Interaction between SagUGL D175N and Δ6S
Hydrogen bonds (<3.3 Å) |
van der Waals contact (C-C distance <4.5 Å) |
|||||||
---|---|---|---|---|---|---|---|---|
Sugar | Atom | Protein | Atom | Distance | Sugar | Atom | Protein | Atom |
Å | ||||||||
ΔGlcUA | O-2 | Asp-115 | Oδ2 | 2.6 | ΔGlcUA | C-1 | Trp-69 | Cδ2, Cζ2, Cγ, Cδ1, Cϵ2 |
O-3 | Asn-175 | Oδ1 | 3.1 | C-2 | Asp-115 | Cγ | ||
Asp-115 | Oδ2 | 3.2 | C-3 | Asn-175 | Cγ | |||
O-6A | Arg-247 | Nη2 | 2.7 | Asp-115 | Cγ | |||
O-6B | Trp-251 | Nϵ1 | 3.1 | Trp-69 | Cδ2, Cϵ3, Cζ3, Cη2, Cζ2, Cϵ2 | |||
Arg-247 | Nϵ | 2.9 | Phe-118 | Cδ1, Cϵ1 | ||||
GalNAc6S | O-1 | Gly-233 | O | 2.8 | C-4 | Asn-175 | Cγ | |
O-4 | Thr-235 | Oγ1 | 2.5 | Trp-69 | Cδ2, Cϵ3, Cζ3, Cη2, Cζ2, Cϵ2 | |||
O-5 | Thr-235 | Oγ1 | 3.2 | Phe-118 | Cϵ1 | |||
O-7 | Asp-115 | Oδ1 | 3.0 | C-5 | Trp-69 | Cζ3, Cη2, Cζ2, Cϵ2 | ||
O-1S | Ser-365 | Oγ | 2.9 | C-6 | Trp-245 | Cη2, Cζ2 | ||
Ser-368 | Oγ | 2.6 | Trp-69 | Cη2, Cζ2 | ||||
O-2S | Ser-368 | Oγ | 3.0 | Arg-247 | Cζ | |||
GalNAc6S | C-3 | Trp-69 | Cδ1 | |||||
C-4 | Tyr-364 | Cϵ1, Cζ | ||||||
C-5 | Tyr-364 | Cϵ1, Cζ | ||||||
C-6 | Thr-235 | Cγ2 | ||||||
Tyr-364 | Cϵ1, Cϵ2, Cζ | |||||||
Ser-365 | Cβ | |||||||
C-7 | Trp-69 | Cδ1 | ||||||
C-8 | Trp-69 | Cδ1 |