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. 2011 Mar 15;6(3):e17773. doi: 10.1371/journal.pone.0017773

Table 3. Environmental interaction detection in Monte Carlo simulation experiment (200 replicates).

QTL True value Estimate
Chr. Position (cM) Variance r 2 (%) Power (%) Position (cM) Variance r 2 (%)
Main-effect 1 70.3 0.926 5.0 100.0 70.3(0.0) 0.8934(0.2176) 4.94(1.21)
262.8 0.926 5.0 99.5 262.8(0.0) 0.8912(0.2131) 4.92(1.15)
2 401.4 0.370 2.0 95.0 401.4(0.0) 0.3552(0.1366) 1.96(0.74)
438.8 0.556 3.0 99.0 438.8(0.0) 0.5215(0.1589) 2.88(0.86)
3 601.6 0.926 5.0 100.0 601.6(0.0) 0.8816(0.2125) 4.87(1.15)
8 1653.4 0.185 1.0 58.0 1653.4(0.4) 0.2097(0.0858) 1.15(0.47)
1747.6 0.370 2.0 93.5 1747.6(0.0) 0.3384(0.1372) 1.87(0.76)
9 1944.7 1.852 10.0 100.0 1944.7(0.0) 1.8511(0.3121) 10.22(1.59)
10 2145.2 0.926 5.0 100.0 2145.2(0.0) 0.9322(0.2352) 5.15(1.23)
2181.6 0.926 5.0 100.0 2181.6(0.0) 0.9081(0.2051) 5.02(1.09)
Environment 0.926 5.0 96.0 0.8744(0.2580) 4.82(1.39)
Environmental 1 55.6 0.463 2.5 97.0 55.6(0.0) 0.4229(0.1391) 2.33(0.75)
interaction 2 401.4 0.463 2.5 98.0 401.4(0.0) 0.4465(0.1678) 2.46(0.88)
438.8 0.926 5.0 100.0 438.8(0.0) 0.8867(0.2100) 4.90 (1.12)
3 682.7 0.926 5.0 100.0 682.7(0.0) 0.9016(0.2190) 4.98(1.19)
8 1747.6 1.852 10.0 100.0 1747.6(0.0) 1.8344(0.2903) 10.13(1.47)
False positive rate (%) 0.0550