Table 4. Environmental interaction detection under the situations of large genome and high-density markers (200 replicates).

QTL	True value				Estimate
	Chr.	Position (cM)	Variance	r 2 (%)	Power (%)	Position (cM)	Variance	r 2 (%)
Main-effect	1	40	0.926	5.0	99.5	40.0(0.0)	0.8889(0.2126)	4.92(1.15)
		60	0.926	5.0	100.0	60.0(0.0)	0.8813(0.2233)	4.88(1.21)
	2	120	0.370	2.0	93.0	120.0(0.0)	0.3579(0.1313)	1.98(0.73)
		160	0.556	3.0	97.0	160.0(0.0)	0.5166(0.1869)	2.85(1.01)
	3	254	0.926	5.0	100.0	254.0(0.0)	0.8938(0.2097)	4.93(1.07)
	5	430	0.185	1.0	63.0	430.0(0.0)	0.1984(0.0801)	1.10(0.45)
		460	0.370	2.0	93.0	460.0(0.0)	0.3570(0.1282)	1.98(0.73)
	7	656	1.852	10.0	100.0	656.0(0.0)	1.8482(0.3380)	10.23(1.81)
	9	842	0.926	5.0	100.0	842.0(0.0)	0.9066(0.2507)	5.02(1.38)
		852	0.926	5.0	99.5	852.0(0.0)	0.8996(0.2350)	4.97(1.24)
Environment			0.926	5.0	91.5		0.9654(0.3431)	5.30(1.79)
Environmental	1	58	0.463	2.5	96.5	58.0(0.1)	0.4351(0.1290)	2.41(0.73)
interaction	2	136	0.463	2.5	95.0	136.0(0.0)	0.4469(0.1554)	2.47(0.86)
	3	254	0.926	5.0	100.0	254.0(0.0)	0.8787(0.2201)	4.86(1.18)
	5	460	0.926	5.0	100.0	460.0(0.0)	0.8878(0.2214)	4.91(1.21)
	9	842	1.852	10.0	100.0	842.0(0.0)	1.7989(0.3053)	9.95(1.59)
False positive rate (%)		0.0597