Table 1.
Genome components of the Korean echovirus 5 (ECV 5) isolate and comparison of predicted N-terminal cleavage sites for the Korean ECV 5 isolate and the Noyce strain
| Region | Nucleotide sequence | Amino acid sequence | Predicted N-terminal cleavage sites | |||||
|---|---|---|---|---|---|---|---|---|
| start | end | length | start | end | length | Kor-ECV5 | Noyce | |
| 5'NCR | 1 | 738 | 738 | - | - | - | - | - |
| Polyprotein | 739 | 7326 | 6588 | 1 | 2196 | 2196 | - | - |
| P1 | 739 | 3324 | 2586 | 1 | 862 | 862 | - | - |
| P2 | 3325 | 5058 | 1734 | 863 | 1440 | 578 | TR/GA | TY/GA |
| P3 | 5059 | 7326 | 2268 | 1441 | 2196 | 756 | FQ/GP | FQ/GP |
| VP4 | 739 | 945 | 207 | 1 | 69 | 69 | - | - |
| VP2 | 946 | 1731 | 786 | 70 | 331 | 262 | LN/SP | LN/SP |
| VP3 | 1732 | 2448 | 717 | 332 | 570 | 239 | PQ/GL | PQ/GL |
| VP1 | 2449 | 3324 | 876 | 571 | 862 | 292 | LQ/GD | LQ/GD |
| 2A | 3325 | 3774 | 450 | 863 | 1012 | 150 | TR/GA | TY/GA |
| 2B | 3775 | 4071 | 297 | 1013 | 1111 | 99 | EQ/GV | EQ/GV |
| 2C | 4072 | 5058 | 987 | 1112 | 1440 | 329 | RQ/NN | RQ/NN |
| 3A | 5059 | 5355 | 267 | 1441 | 1529 | 89 | FQ/GP | FQ/GP |
| 3B | 5356 | 5421 | 66 | 1530 | 1551 | 22 | FQ/GA | FQ/GA |
| 3C | 5422 | 5970 | 549 | 1552 | 1734 | 183 | VQ/GP | VQ/GP |
| 3D | 5971 | 7326 | 1386 | 1735 | 2196 | 462 | EQ/GE | EQ/GE |
| 3'NCR | 7327 | 7430 | 104 | - | - | - | - | - |