Table 2.
Primer Sequence | a(position, specificity, and polarity) |
---|---|
First PCR | |
P1 5'-TCA CCA TAT TCT TGG GAA CAA GA-3' | (nt 2823-2845, universal, sense) |
S1-2 5'-CGA ACC ACT GAA CAA ATG GC-3' | (nt 685-704, universal, antisense) |
Second PCR | |
Mix A | |
B2 5'-GGC TCM AGT TCM GGA ACA GT-3' | (nt 67-86, types A to E specific, sense) |
BA1R 5'-CTC GCG GAG ATT GAC GAG ATG T-3' | (nt 113-134, type A specific, antisense) |
B1R 5'-CAG GTT GGT GAG TGA CTG GAG A-3' | (nt 324-345, type B specific, antisense) |
BC1R 5'-GGT CCT AGG AAT CCT GAT GTT G-3' | (nt 165-186, type C specific, antisense) |
Mix B | |
BD1 5'-GCC AAC AAG GTA GGA GCT-3' | (nt 2979-2996, type D specific, sense) |
BE1 5'-CAC CAG AAA TCC AGA TTG GGA CCA-3' | (nt 2955-2978, type E specific, sense) |
BF1 5'-GYT ACG GTC CAG GGT TAC CA-3' | (nt 3032-3051, type F specific, sense) |
B2R 5'-GGA GGC GGA TYT GCT GGC AA-3' | (nt 3078-3097, types D to F specific, antisense) |
a An "M" represents a nucleotide that could be either an A or a C; a"Y" represents a nucleotide that could be either a C or a T. nt: nucleotide.