Table II. Genes homologous to YadA in public databases.
| Abbrev. | Origin | Source | No. of genesa | Incomplete | Frameshifted | Remarks | |
|---|---|---|---|---|---|---|---|
| α proteobacteria | |||||||
| Rhizobacteria | |||||||
| Sinorhizobium meliloti 1021 | Sme | genomic | Stanfordc | 2 | 2 | probably fragments of the same gene | |
| β proteobacteria | |||||||
| β thiobacilli | |||||||
| Thiobacillus ferrooxidans ATCC23270 | Tfe | genomic | TIGRd | 2 | 2 | probably fragments of the same gene; contains a unique repeat motif | |
| Neisseriaceae | |||||||
| Neisseria gonorrheae FA1090 | Ngo | genomic | Oklahoma Univ.e | 2 | 1 | 1 | incomplete gene appears disrupted by insertion of a multicopy genetic element |
| Neisseria meningitidis A Z2491b | Nma | genomic | Sangerf | 1 | head domain homologous to Haemophilus Hia/Hsf proteins | ||
| Neisseria meningitidis B MC58b | Nmb | DDBJ/EMBL/GenBank | 2 | both genes in Nme different from the two genes in Ngo | |||
| γ proteobacteria | |||||||
| Enterobacteriaceae | |||||||
| Escherichia coli ECOR-9 | Eco | DDBJ/EMBL/GenBank | 4 | Eib genes are carried by Atlas prophages; phage P-EibA may be defective | |||
| Salmonella enteritidis LK5 | Sen | genomic | Univ. of Illinoisg | 1 | 1 | same gene in all four Salmonella species; contains 10 copies of the neck sequence | |
| Salmonella paratyphi A ATCC9150 | Spa | genomic | Washington Univ.h | 1 | 1 | gene in Spa contains eight frameshifts | |
| Salmonella typhi CT18 | Sti | genomic | Sanger | 1 | 1 | ||
| Salmonella typhimurium LT2 | Sty | genomic | Washington Univ. | 1 | 1 | ||
| Yersinia enterocolitica serotype O3 | Ye1 | DDBJ/EMBL/GenBank | 1 | from plasmid pYV6471/76 | |||
| Yersinia enterocolitica serotype O8 | Ye2 | DDBJ/EMBL/GenBank | 1 | from plasmid pYV8081 | |||
| Yersinia pestis CO-92 biovar Orientalis | Ype | genomic | Sanger | 5 | 2 | YadA gene is frameshifted; two YadA-like genes contiguous on contig 653 | |
| Yersinia pseudotuberculosis | Yps | DDBJ/EMBL/GenBank | 1 | from plasmid pIBI | |||
| Pasteurellaceae | |||||||
| Actinobacillus actinomycetemcomitans | Aac | genomic | Oklahoma Univ. | 3 | 2 | ||
| Haemophilus ducreyi 35000 | Hdu | DDBJ/EMBL/GenBank | 1 | DsrA; not present in H.influenzae Rd | |||
| Haemophilus influenzae nontypable 11 | Hi1 | DDBJ/EMBL/GenBank | 1 | Hia | |||
| Haemophilus influenzae C54 | Hi2 | DDBJ/EMBL/GenBank | 1 | Hsf (Hia homolog) | |||
| Haemophilus influenzae Rdb | Hi3 | DDBJ/EMBL/GenBank | 2 | 1 | 1 | Hia gene is frameshifted; incomplete gene resembles YadA | |
| Pasteurella multocida PM70 | Pmu | genomic | Univ. of Minnesotai | 2 | Pmu 70b contains a unique repeat motif | ||
| Moraxellaceae | |||||||
| Moraxella catarrhalis O35E | Mca | DDBJ/EMBL/GenBank | 2 | UspA2 has a unique head sequence | |||
| Xanthomonas group | |||||||
| Xanthomonas campestris Xpel-1 | Xac | DDBJ/EMBL/GenBank | 1 | X.campestris Orf1, X.oryzae XadA and X.fastidiosa XF1516 are homologous | |||
| Xanthomonas oryzae | Xao | DDBJ/EMBL/GenBank | 1 | 1 | XadA | ||
| Xylella fastidiosa | Xyl | DDBJ/EMBL/GenBank | 3 | XF1516 contains 5, XF1529 15, and XF1981 7 copies of the neck sequence | |||
aThis column includes incomplete and frameshifted genes.
bComplete genomes.