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. 2000 Dec 1;19(23):6299–6310. doi: 10.1093/emboj/19.23.6299

graphic file with name cdd638f6.jpg

Fig. 6. Substrate binding. (A) 2FoFc electron density contoured at 1σ for the substrate pentapeptide is shown in green, that of the substrate recognition clamp in blue. (B) The substrate peptide (P-Ser19 to P-Cys22) forms a regular parallel β-sheet with β-strand S7 of the substrate clamp (Phe149 to Ile151) and backbone H-bonds to the protein surface on the opposite side to Asn14 (carbonyl and amide of P-Tyr20) and Asn117 (amide and carboxylate of P-Cys22). (C) Surface representation of the binding pocket for P-Tyr20 coloured according to the H-bonding properties of the contributing protein residues (grey, hydrophobic; red, H-bond donors; blue, H-bond acceptors).