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. 2011 Jan 28;6(1):e14608. doi: 10.1371/journal.pone.0014608

Table 3. Amino acid content on the surface of GH5 β-mannanases with known 3D structure.

Parameters BSP165 BA BSP602 TF ME HJ
PDB code 3jug 2whj 1wky 1bqc 2c0h 1qno
Total 56 55 56 53 63 74
Asp (%) 23.2 25.5 14.3 7.5 4.8 5.4
Glu (%) 17.9 18.2 10.7 7.5 3.2 1.4
Negatively charged (%) 41.1 43.6 25 15.1 7.91 6.8
Arg (%) 7.1 1.8 12.5 1.9 7.94 1.4
Lys (%) 7.1 7.3 3.6 7.5 11.1 6.8
Positively charged (%) 14.3 9.1 16.1 9.41 19.0 8.1
Negatively charged/positively charged (%) 2.9 4.8 1.6 1.6 0.4 0.8
Asn (%) 7.1 5.5 17.9 11.3 17.5 13.5
Gln (%) 7.1 9.1 5.4 13.2 6.3 18.9
His (%) 3.6 3.6 0 0 7.9 1.4
Thr (%) 1.8 7.3 3.6 3.8 4.8 16.2
Ser (%) 5.4 5.5 8.9 15.1 15.9 14.9
Polar, uncharged (%) 25 30.9 35.7 43.4 52.4 64.9
Tyr (%) 3.6 1.8 1.8 5.7 1.6 1.4
Gly (%) 0 1.8 1.8 3.8 7.9 8.1
Pro (%) 5.4 5.5 8.9 7.5 1.6 2.7
Trp (%) 5.4 5.5 1.8 1.9 3.2 0
Leu (%) 0 0 1.8 0 0 0
Ile (%) 1.8 0 1.8 0 0 0
Val (%) 0 0 0 0 3.2 0
Ala (%) 3.6 1.8 5.4 13.2 3.2 8.1
Hydrophobic (%) 19.6 16.4 23.2 32.1 20.6 20.3
Asn+Gln (%) 14.3 14.5 23.2 24.5 23.8 32.4
Thr+Ser (%) 7.2 12.8 12.5 18.9 20.7 31.1