Table 1.

Queries tested against the DaRQL implementation and their associated translations. GO terms retrieved from these queries used in a pairwise comparison without posed queries (cf. Figure 8).

Name	Query	Description
A	1: TARGET ?g∼‘AmiGO’ 2:  FROM ? s∼ ProteinSequenceQuery 3:  RESTRICT 4:   {?s.*.@NonRepository.*.?g}, 5:   divcount(?g) > 2, 6:   order(?g) >= @CurationBased	Retrieves GO terms linked from motif-, conserved domain- or protein family-based databases that are supported by more than two domain types and whose levels of evidence is equal to or greater than semi-manual curation.
B	1: TARGET ?g∼‘AmiGO’ 2:  FROM ?s∼ProteinSequenceQuery 3:  RESTRICT 4:   {?s.*.Gene.*.?g}, 5:   divcount(?g) > 3	Retrieves GO terms whose path to the query passes through at least one Gene entity as defined in the schema, and which are also supported by more than three different domain types.
C	1: TARGET ?g∼‘AmiGO’ 2:  FROM ?s∼ProteinSequenceQuery 3:  RESTRICT 4:   {?s.*.Gene.*.?g}, 5:   divcount(?g) > 2	Retrieves GO terms whose path to the query passes through at least one Gene entity, and which are also supported by more than two different domain types.
D	1: TARGET ?g∼‘AmiGO’ 2:  FROM ?s∼ProteinSequenceQuery 3:  RESTRICT 4:   {?s.*.‘InterPro’.*.?g}, 5:   order(?g) >= @PathwayBased	Retrieves GO terms linked from a specific data source (Inter Pro), and which is supported by a level of evidence equal to or greater than that of pathway support.
E	1: TARGET ?g∼‘AmiGO’ 2:  FROM ?s∼ProteinSequenceQuery 3:  RESTRICT 4:   order(?g) >= @ExperimentBased	Retrieves GO terms supported by a level of evidence equal to or greater than that of experimental results.