Table 2.

CNPs that Overlap Coding Sequence and Are Population Differentiated

Genomic Coordinates	Genes	SDa	Max VST (Initial)b	Max VST (Follow-Up)	Copy-Number Difference Observed
chr19:59492964-59497244	LILRA3	1.00	0.62	0.51	Non-Asians > Asians
chr12:11105655-11106159	TAS2R46	0.00	0.61	0.63	Non-Africans > Africans
chr4:69069560-69165912	UGT2B17	0.51	0.61	0.65	Non-Asians > Asians
chr17:42971236-43018268	NPEPPS	1.00	0.56	0.62	Africans > Non-Africans
chr22:44102556-44102628	FAM118A	0.00	0.55	0.51	Europeans > Africans
chr17:18302826-18366016	LGALS9C	1.00	0.49	0.57	Non-Europeans > Europeans
chr12:11065498-11066488	TAS2R48	1.00	0.49	0.64	Non-Africans > Africans
chr5:68857344-68890304	OCLN	0.75	0.48	0.51	Africans > Asians
chr2:88104488-88108744	KRCC1	0.00	0.46	0.32	Europeans > Non-Europeans
chr17:31562760-31564406	CCL4L2; CCL4L1	1.00	0.45	0.51	Non-Europeans > Europeans
chr14:73079816-73082320	ACOT1	1.00	0.43	0.47	Africans > Asians
chr11:47728864-47729376	FNBP4	0.00	0.43	0.13	All Others > MKK
chr1:143670880-143792368	PDE4DIP	0.22	0.43	0.55	Asians > Africans
chr17:31634154-31665600	CCL3L1; CCL4L2; CCL4L1	1.00	0.39	0.54	Non-Europeans > Europeans
chr17:31527042-31548308	CCL3L3; CCL3L1	1.00	0.39	0.43	Non-Europeans > Europeans
chr16:14999403-15007845	PDXDC1	1.00	0.38	0.63	Non-Asians > Asians
chr17:41521520-41647328	KIAA1267	0.20	0.37	0.46	Europeans > Non-Europeans
chr8:133060680-133061512	EFR3A	0.00	0.36	0.14	All Others > MKK
chr16:15008083-15010605	PDXDC1	1.00	0.35	0.45	Non-Asians > Asians
chr1:108535176-108538816	SLC25A24	0.00	0.34	0.30	Africans > Asians
chr2:73859008-73860128	DUSP11	0.00	0.34	0.18	All Others > MKK
chr16:31717708-32594648	ZNF267; TP53TG3	0.71	0.34	0.54	Africans > Non-Africans
chr1:120336200-120391104	NOTCH2	1.00	0.34	0.56	Non-Africans > Africans
chr12:376735-391793	CCDC77; NM_001130148	0.00	0.34	0.30	All Others > MKK
chr8:20121520-20122080	ATP6V1B2	0.00	0.33	0.39	All Others > MKK
chr20:1511631-1531931	NM_001135844	0.00	0.33	0.25	Non-Africans > Africans
chr22:17038218-17061216	USP18	1.00	0.33	0.30	Africans > Non-Africans
chr18:42800004-42816252	TCEB3C; TCEB3CL; TCEB3B	0.80	0.32	0.29	Africans > Asians
chr17:32840120-32855124	TADA2L; ACACA; NM_001166105	0.00	0.32	0.25	Africans > Non-Africans
chr18:9245958-9246779	ANKRD12	0.00	0.30	0.22	All Others > MKK

Bolded CNPs were not reported as differentiated with sequencing data.¹³ SD is an abbreviation for segmental duplication.

^aProportion of CNP base pairs in segmental duplications.

^bMaximum V_ST obtained from all pairwise comparisons between populations for each CNP.