TABLE 2.
Top 20 proteins and proteins with known function displaying similar secondary structure as predicted for AurZ
SS = secondary structure score for how well the PSIPRED-predicted (three-state) or actual DSSP-determined (eight-state) secondary structure sequence agree with each other. I = identity on primary sequence level for aligned region.
| Hit | PDB identifier | Predicted function (origin) | SS | Coverage | I |
|---|---|---|---|---|---|
| 1 | 3HF5_A; 3HDS_A; 3HFK_A; 2IFX_A (MLMI) | 4-Methylmuconolactone methylisomerase (Pseudomonas reinekei) | 11.0 | 108 aa | 15% |
| 2 | 2FTR_A | Unknown (Bacillus halodurans) | 11.9 | 106 aa | 14% |
| 3 | 3BF4_A | Ethyl TERT-butyl ether degradation (Ralstonia eutropha) | 11.5 | 103 aa | 10% |
| 4 | 1TR0_A; 1SI9_A | Stress protein (unknown function) (Populus tremula) | 13.7 | 106 aa | 10% |
| 5 | 2JDJ_A (HapK) | Prodigiosin biosynthesis (unknown) (Hahella chejuensis) | 10.2 | 82 aa | 11% |
| 6 | 3BB5_A | Stress responsive alpha-beta protein (Jannaschia sp) | 12.6 | 103 aa | 10% |
| 7 | 2FB0_A | Unknown (Bacteroides thetaiotaomicron) | 10.5 | 78 aa | 8% |
| 8 | 1Q4R_A; 1Q53_A;2Q3P_A | Unknown (Arabidopsis thaliana) | 11.6 | 106 aa | 15% |
| 9 | 2OMO_A | Predicted oxidoreductase (Nitrosomonas europaea) | 11.0 | 121 aa | 14% |
| 10 | 3FMB_A | Unknown (Bacteroides fragilis) | 13.3 | 101 aa | 13% |
| 11 | 2GYC_A | Unknown (Bordetella bronchiseptica) | 12.7 | 96 aa | 10% |
| 12 | 3BDE_A | Unknown (Mesorhizobium loti) | 12.0 | 97 aa | 18% |
| 13 | 3LO3_A | Unknown (Colwellia psychrerythraea) | 8.2 | 66 aa | 8% |
| 14 | 3E8O_A | Unknown (Deinococcus radiodurans) | 11.6 | 105 aa | 11% |
| 15 | 3BN7_A | Unknown (Caulobacter crescentus) | 12.0 | 86 aa | 14% |
| 16 | 3KG0_A; 3KG1_A; 3KNG_A (SnoB) | Anthracycline monooxygenase (Streptomyces nogalater) | 9.7 | 98 aa | 18% |
| 17 | 1IUJ_A (TT1380)) | Unknown (Thermus thermophilus) | 9.5 | 100 aa | 13% |
| 18 | 1X7V_A (PA3566) | Unknown (Pseudomonas aeruginosa) | 11.3 | 82 aa | 13% |
| 19 | 1Q8B_A | Unknown (Bacillus subtilis) | 9.1 | 95 aa | 7% |
| 20 | 3BM7_A | Unknown (Caulobacter crescentus) | 10.0 | 79 aa | 14% |
| 28 | 1TUV_A; 1R6Y_A (YgiN) | Menadione oxidase (Escherichia coli) | 11.8 | 86 aa | 10% |
| 35 | 1SQE_A; 2ZDP_A; 3LGM_A; 3LGN_A (IsdG/I) | Heme-degrading enzyme (Staphylococcus aureus) | 6.3 | 75 aa | 11% |
| 37 | 1Y0H_A | Monooxygenase (Mycobacterium tuberculosis) | 7.8 | 102 aa | 9% |