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. Author manuscript; available in PMC: 2011 Mar 18.
Published in final edited form as: Clin Cancer Res. 2008 Jul 1;14(13):4038–4044. doi: 10.1158/1078-0432.CCR-07-4379

Table 1.

Primer sequences and annealing temperatures for PCR

Gene Ref. Seq Exon Function Forward Primer Reverse Primer Annealing Temperature °C
WISP3 NM_003880 4 Cell attachment domain. GATAGAGTGATAAATTAGACCATCGGCT CATTGGTCACCCTGTTAGATATTCC 55
CTNNB1 NM_001904 3 GSK3b regulatory domain ATGGAACCAGACAGAAAAGCGGC GCTACTTGTTCTTGAGTGAAG 58
APC NM_000038 15a b-Catenin regulatory domain CAGACTTATTGTGTAGAAGA CTCCTGAAGAAAATTCAACA 52
APC 15b b-Catenin regulatory domain AGGGTTCTAGTTTATCTTCA TCTGCTTGGTGGCATGGTTT 52
APC 15c b-Catenin regulatory domain GGCATTATAAGCCCCAGTGA TGGCTCATCGAGGCTCAGAG 52
APC 15d b-Catenin regulatory domain ACTCCAGATGGATTTTCTTG GGCTGGCTTTTTTGCTTTAC 52
AXIN1 NM_003502 2a APC binding CGTCATCGTGAGTCTTGTCT TCAGCCCACTTCAAGTATGG 55
AXIN1 2b APC binding AAGGTGAGACTTCGACGG ATAGTGGCCTGGATTTCGGT 55
AXIN1 2c APC binding AACAATGGCATCGTGTCCCG TGTCTCCAGGAGCAGCTTCT 55
AXIN1 2d APC binding CCTGCCGACCTTAAATGAAG GGACATCCGGTGTGGGTTAA 55
AXIN1 3 GSK3b binding ACAGGTGGAGATGTTGGTC ACACATTGCTGTCCTCAAGG 55
AXIN1 4 GSK3b binding ATCACCTGTGTGCACGTGT ACTGGCCACTTGCAGATG 55
AXIN1 5 GSK3b binding AGCACACGCTTTCCCTTCA CCCATGAAGAAGCATCAGGAC 55
AXIN1 6a b-Catenin binding TGGGTCAGGCCTGATGCTTTT ACTGGCATCTTGGCCACGT 55
AXIN1 6b b-Catenin binding AGCATCCTGGACGAGCACGT TGCAGAAGGCCAGAACCT 55
AXIN2 NM_004655 7 DSH Binding CAAAGCACAAAAAAGGCCTAC GATTCCTGTCCCTCTGCTGAC 60