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. 2011 Mar 18;6(3):e17624. doi: 10.1371/journal.pone.0017624

Table 1. Summary of crystal parameters, data collection and refinement statistics for PDB 3hn7.

Space group C2
Unit cell parameters a = 105.45 Å, b = 52.76 Å, c = 89.99 Å, β = 98.47°
Data collection λ1 MAD-Se λ2 MAD-Se λ3 MAD-Se
Wavelength (Å) 0.9116 0.9793 0.9792
Resolution range (Å) 29.0–1.65 29.0–1.65 29.0–1.69
Number of observations 196,918 195,361 182,672
Number of unique reflections 59,026 58,985 55,004
Completeness (%) 100 (100)a 100 (100)a 100 (100)a
Mean I/σ(I) 11.5 (2.2)a 9.9 (1.7)a 10.5 (1.8)a
Rsym on I (%) 0.076 (0.51)a 0.093 (0.58)a 0.085 (0.54)a
Highest resolution shell (Å) 1.69–1.65 1.69–1.65 1.73–1.69
Model and refinement statistics
Resolution range (Å) 29.0–1.65 Data set used in refinement λ1 MAD-Se
No. of reflections (total) 59,024b Cutoff criteria |F|>0
No. of reflections (test) 2,985 Rcryst 0.154
Completeness (% total) 100 Rfree 0.187
Stereochemical parameters
Restraints (RMSD observed)
Bond angle (°) 1.59
Bond length (Å) 0.018
Average protein isotropic B-value (Å2) 19.6c
ESU based on Rfree (Å) 0.087
No. of protein residues/atoms 480/3728
No. of water molecules 588 (with 10 modeled in alternate positions)
a

Highest resolution shell.

ESU = Estimated overall coordinate error [33].

Rsym = Σ|Ii-<Ii>|/Σ|Ii|, where Ii is the scaled intensity of the ith measurement and <Ii> is the mean intensity for that reflection.

Rcryst = Σ||Fobs|-|Fcalc||/Σ|Fobs|, where Fcalc and Fobs are the calculated and observed structure factor amplitudes, respectively.

Rfree = as for Rcryst, but for 5.1% of the total reflections chosen at random and omitted from refinement.

b

Typically, the number of unique reflections used in refinement is slightly less that the total number that were integrated and scaled. Reflections are excluded due to negative intensities and rounding errors in the resolution limits and cell parameters.

c

This value represents the total B that includes TLS and residual B components.