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Average running times on the full dataset
| Sampling rate | 0.25 | 0.75 | 1 |
|---|---|---|---|
| Running time for 10 repetitions | 00:00:04 | 00:00:07 | 00:00:11 |
| Running time for 100 repetitions | 00:00:54 | 00:03:30 | 00:04:46 |
| Running time for 1000 repetitions | 00:40:15 | 03:09:14 | 05:09:52 |
The full dataset contained 26,803 protein pairs including 105 known in the literature. Times were averaged over two runs and were recorded on an AMD Opteron (64 bits, 2.3 GHz) processor-based computer.
