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. 2011 Feb 24;240(2):89–110. doi: 10.1007/s00232-011-9347-9

Table 3.

Comparison of different segments within OPT proteins using the GGSEARCH, HMMER and SAM programs (The format of presentation is the same as for Table 2)

Comparison Superfamily Family, TC Profile Database GGSEARCH HMMER SAM
Protein-1 Acc Protein-2 Acc (e-value) (e-value) (e-value)
1 OPT AB vs. CD 2.A.67.3 Spr1 YP_001477255.1 Lsa1 YP_394932.1 1.7e−8 4.0e−4 0.1
OPT CD vs. AB 2.A.67.4 Lsa1 YP_394932.1 Spr1 YP_001477255.1 7.7e−7 0.004 0.004
2 OPT A vs. B 2.A.67.4 Ngo1 YP_208927.1 Sde1 YP_526125.1 5.8e−6 0.06 0.5
OPT B vs. A 2.A.67.4 Sde1 YP_526125.1 Ngo1 YP_208927.1 3.2e−5 0.2 0.09
3 OPT A vs. C 2.A.67.2 Zma1 NP_001104952.1 Chy1 YP_361078.1 8.6e−6 0.03 0.002
OPT C vs. A 2.A.67.4 Chy1 YP_361078.1 Zma1 NP_001104952.1 9.2e−6 0.03 0.02
4 OPT A vs. D 2.A.67.1 Gze4 XP_389463.1 Sus1 YP_822933.1 8.0e−4 0.09 2
OPT D vs. A 2.A.67.4 Sus1 YP_822933.1 Gze4 XP_389463.1 1.4e−4 0.03 0.2
5 OPT B vs. C 2.A.67.1 Sco1 AAF26618.1 Mtu1 NP_216911.1 3.6e−2 0.07 0.01
OPT C vs. B 2.A.67.4 Mtu1 NP_216911.1 Sco1 AAF26618.1 1.9e−3 0.08 0.003
6 OPT B vs. D 2.A.67.2 Osa28 CAE02279.2 Asu1 YP_001343430.1 3.9e−8 0.006 0.02
OPT D vs. B 2.A.67.4 Asu1 YP_001343430.1 Osa28 CAE02279.2 3.7e−4 0.007 0.001
7 OPT C vs. D 2.A.67.4 Pgi1 NP_904744.1 Ani11 XP_658304.1 2.4e−4 0.2 2
OPT D vs. C 2.A.67.2 Ani11 XP_658304.1 Pgi1 NP_904744.1 2.0e−4 0.05 0.5