Table 3.
Comparison of different segments within OPT proteins using the GGSEARCH, HMMER and SAM programs (The format of presentation is the same as for Table 2)
| Comparison | Superfamily | Family, TC | Profile | Database | GGSEARCH | HMMER | SAM | ||
|---|---|---|---|---|---|---|---|---|---|
| Protein-1 | Acc | Protein-2 | Acc | (e-value) | (e-value) | (e-value) | |||
| 1 | OPT AB vs. CD | 2.A.67.3 | Spr1 | YP_001477255.1 | Lsa1 | YP_394932.1 | 1.7e−8 | 4.0e−4 | 0.1 |
| OPT CD vs. AB | 2.A.67.4 | Lsa1 | YP_394932.1 | Spr1 | YP_001477255.1 | 7.7e−7 | 0.004 | 0.004 | |
| 2 | OPT A vs. B | 2.A.67.4 | Ngo1 | YP_208927.1 | Sde1 | YP_526125.1 | 5.8e−6 | 0.06 | 0.5 |
| OPT B vs. A | 2.A.67.4 | Sde1 | YP_526125.1 | Ngo1 | YP_208927.1 | 3.2e−5 | 0.2 | 0.09 | |
| 3 | OPT A vs. C | 2.A.67.2 | Zma1 | NP_001104952.1 | Chy1 | YP_361078.1 | 8.6e−6 | 0.03 | 0.002 |
| OPT C vs. A | 2.A.67.4 | Chy1 | YP_361078.1 | Zma1 | NP_001104952.1 | 9.2e−6 | 0.03 | 0.02 | |
| 4 | OPT A vs. D | 2.A.67.1 | Gze4 | XP_389463.1 | Sus1 | YP_822933.1 | 8.0e−4 | 0.09 | 2 |
| OPT D vs. A | 2.A.67.4 | Sus1 | YP_822933.1 | Gze4 | XP_389463.1 | 1.4e−4 | 0.03 | 0.2 | |
| 5 | OPT B vs. C | 2.A.67.1 | Sco1 | AAF26618.1 | Mtu1 | NP_216911.1 | 3.6e−2 | 0.07 | 0.01 |
| OPT C vs. B | 2.A.67.4 | Mtu1 | NP_216911.1 | Sco1 | AAF26618.1 | 1.9e−3 | 0.08 | 0.003 | |
| 6 | OPT B vs. D | 2.A.67.2 | Osa28 | CAE02279.2 | Asu1 | YP_001343430.1 | 3.9e−8 | 0.006 | 0.02 |
| OPT D vs. B | 2.A.67.4 | Asu1 | YP_001343430.1 | Osa28 | CAE02279.2 | 3.7e−4 | 0.007 | 0.001 | |
| 7 | OPT C vs. D | 2.A.67.4 | Pgi1 | NP_904744.1 | Ani11 | XP_658304.1 | 2.4e−4 | 0.2 | 2 |
| OPT D vs. C | 2.A.67.2 | Ani11 | XP_658304.1 | Pgi1 | NP_904744.1 | 2.0e−4 | 0.05 | 0.5 | |