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. 2010 Nov;51(11):6038–6050. doi: 10.1167/iovs.10-5443

Table 3.

Significant Human KEGG Pathway

Seven Weeks
hsa04722 Neurotrophin signaling pathway
    CAMK2G; calcium/calmodulin-dependent protein kinase II gamma
    NTRK2; neurotrophic tyrosine kinase, receptor, type 2
    RAP1B; RAP1B, member of RAS oncogene family
    SHC3; SHC (Src homology 2 domain containing) transforming protein 3
hsa04510 Focal adhesion
    PRKCB; protein kinase C, beta
    RAP1B; RAP1B, member of RAS oncogene family
    SHC3; SHC (Src homology 2 domain containing) transforming protein 3
    SPP1; secreted phosphoprotein 1
hsa04012 ErbB signaling pathway
hsa05214 Glioma
    CAMK2G; calcium/calmodulin-dependent protein kinase II gamma
    PRKCB; protein kinase C, beta
    SHC3; SHC (Src homology 2 domain containing) transforming protein 3
hsa04062 Chemokine signaling pathway
    PRKCB; protein kinase C, beta
    RAP1B; RAP1B, member of RAS oncogene family
    SHC3; SHC (Src homology 2 domain containing) transforming protein 3
hsa05200 Pathways in cancer
    PRKCB; protein kinase C, beta
    RALA; v-ral simian leukemia viral oncogene homolog A (ras related)
    TCEB1; transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
hsa04010 MAPK signaling pathway
    NTRK2; neurotrophic tyrosine kinase, receptor, type 2
    PRKCB; protein kinase C, beta
    RAP1B; RAP1B, member of RAS oncogene family
hsa04720 Long-term potentiation
    CAMK2G; calcium/calmodulin-dependent protein kinase II gamma
    PRKCB; protein kinase C, beta
    RAP1B; RAP1B, member of RAS oncogene family
hsa01100 Metabolic pathways
    ATP6V1H; ATPase, H+ transporting, lysosomal 50/57 kDa, V1 subunit H
    NDUFS4; NADH dehydrogenase (ubiquinone) Fe-S protein 4
    RDH11; retinol dehydrogenase 11
Combined Analysis
hsa01100 Metabolic pathways
    ACSL1; acyl-CoA synthetase long-chain family member 1
    ADC; arginine decarboxylase
    NDUFS4; NADH dehydrogenase (ubiquinone) Fe-S protein 4
    RDH11; retinol dehydrogenase 11

The pathways were identified with the DE genes at seven weeks and regardless of age (7 and 16 weeks; combined analysis). Pathways having more than two genes are reported; no significant pathway was found at 16 weeks.