Table 1.
Statistical analysis of U values.
0%-100% (a1=0, a2=100) | 5%-95% (a1=5, a2=95) | 10%-90% (a1=10, a2=90) | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Avrg | SEM | p-value | Grubb test | Avrg | SEM | p-value | Grubb test | Avrg | SEM | p-value* | Grubb test | |
ALA | 1.0946 | 0.0435 | < 0.0001 | 0.982 | 1.198 | 0.042 | < 0.0001 | 0.954 | 1.244 | 0.050 | < 0.0001 | 0.970 |
ARG | 1.8177 | 0.1620 | < 0.0001 | 0.193 | 2.170 | 0.121 | < 0.0001 | 0.103 | 2.095 | 0.096 | < 0.0001 | 0.135 |
ASN | 1.9614 | 0.1184 | < 0.0001 | 0.036 | 2.320 | 0.126 | < 0.0001 | 0.029 | 2.467 | 0.137 | < 0.0001 | 0.230 |
ASP | 1.5031 | 0.0728 | < 0.0001 | 0.536 | 1.724 | 0.088 | < 0.0001 | 0.495 | 1.619 | 0.050 | < 0.0001 | 0.602 |
CYS | 4.5809 | 0.3846 | - | 2.822 | 5.376 | 0.281 | - | 2.712 | 4.835 | 0.279 | - | 2.555 |
GLN | 2.0750 | 0.1164 | < 0.0001 | 0.088 | 2.499 | 0.189 | < 0.0001 | 0.186 | 2.776 | 0.205 | < 0.0001 | 0.534 |
GLU | 1.2493 | 0.0583 | < 0.0001 | 0.813 | 1.246 | 0.078 | < 0.0001 | 0.914 | 1.194 | 0.060 | < 0.0001 | 1.020 |
GLY | 1.9518 | 0.2277 | < 0.0001 | 0.047 | 2.912 | 0.316 | < 0.0001 | 0.549 | 2.641 | 0.199 | < 0.0001 | 0.401 |
HIS | 3.0330 | 0.2264 | 0.0022 | 1.133 | 3.885 | 0.244 | 0.0014 | 1.403 | 3.742 | 0.190 | 0.0038 | 1.482 |
ILE | 1.1824 | 0.0366 | < 0.0001 | 0.886 | 1.100 | 0.026 | < 0.0001 | 1.043 | 1.124 | 0.033 | < 0.0001 | 1.088 |
LEU | 1.1723 | 0.0980 | < 0.0001 | 0.897 | 1.161 | 0.081 | < 0.0001 | 0.989 | 1.136 | 0.070 | < 0.0001 | 1.076 |
LYS | 1.2946 | 0.0682 | < 0.0001 | 0.763 | 1.316 | 0.062 | < 0.0001 | 0.853 | 1.393 | 0.061 | < 0.0001 | 0.824 |
MET | 2.7132 | 0.2046 | 0.0003 | 0.784 | 3.138 | 0.205 | < 0.0001 | 0.747 | 3.151 | 0.212 | < 0.0001 | 0.902 |
PHE | 1.9166 | 0.0821 | < 0.0001 | 0.085 | 2.096 | 0.089 | < 0.0001 | 0.167 | 1.998 | 0.074 | < 0.0001 | 0.230 |
PRO | 2.2688 | 0.3933 | < 0.0001 | 0.299 | 2.592 | 0.196 | < 0.0001 | 0.268 | 2.371 | 0.135 | < 0.0001 | 0.136 |
SER | 1.5879 | 0.0914 | < 0.0001 | 0.444 | 1.770 | 0.115 | < 0.0001 | 0.454 | 1.958 | 0.124 | < 0.0001 | 0.269 |
THR | 1.5873 | 0.0675 | < 0.0001 | 0.444 | 1.863 | 0.075 | < 0.0001 | 0.372 | 1.965 | 0.074 | < 0.0001 | 0.263 |
TRP | 3.7128 | 0.1699 | 0.0499 | 1.875 | 4.057 | 0.184 | 0.0019 | 1.554 | 3.717 | 0.273 | 0.009 | 1.457 |
TYR | 2.1025 | 0.1206 | < 0.0001 | 0.118 | 2.240 | 0.110 | < 0.0001 | 0.041 | 2.125 | 0.096 | < 0.0001 | 0.105 |
VAL | 1.0832 | 0.0251 | < 0.0001 | 0.994 | 1.077 | 0.024 | < 0.0001 | 1.062 | 1.099 | 0.029 | < 0.0001 | 1.112 |
Statistical analysis of U values. The analysis used Eq. 1 and considered different intervals for the definition of degeneration (a1 parameter in Eq. 1) and conservation (a2 parameter in Eq. 1). Avrg, indicates average value found for ModBase homology models separated by organism (13 organisms). SEM, standard error of means (p-value calculated with n=13); in the Grubb test column, the results of the Grubb's test for outlier, with critical Z-score (for N=20) of 2.71. Outliers with p-value <0.05 are shown in bold.
The p-value refers to pairwise comparison of calculated values (e.g., “ModBase Avrg” values), between Cys and each one of the other amino acids.