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. Author manuscript; available in PMC: 2011 Dec 17.
Published in final edited form as: J Mol Biol. 2010 Oct 13;404(5):902–916. doi: 10.1016/j.jmb.2010.09.027

Table 1.

Statistical analysis of U values.

0%-100% (a1=0, a2=100) 5%-95% (a1=5, a2=95) 10%-90% (a1=10, a2=90)
Avrg SEM p-value Grubb test Avrg SEM p-value Grubb test Avrg SEM p-value* Grubb test
ALA 1.0946 0.0435 < 0.0001 0.982 1.198 0.042 < 0.0001 0.954 1.244 0.050 < 0.0001 0.970
ARG 1.8177 0.1620 < 0.0001 0.193 2.170 0.121 < 0.0001 0.103 2.095 0.096 < 0.0001 0.135
ASN 1.9614 0.1184 < 0.0001 0.036 2.320 0.126 < 0.0001 0.029 2.467 0.137 < 0.0001 0.230
ASP 1.5031 0.0728 < 0.0001 0.536 1.724 0.088 < 0.0001 0.495 1.619 0.050 < 0.0001 0.602
CYS 4.5809 0.3846 - 2.822 5.376 0.281 - 2.712 4.835 0.279 - 2.555
GLN 2.0750 0.1164 < 0.0001 0.088 2.499 0.189 < 0.0001 0.186 2.776 0.205 < 0.0001 0.534
GLU 1.2493 0.0583 < 0.0001 0.813 1.246 0.078 < 0.0001 0.914 1.194 0.060 < 0.0001 1.020
GLY 1.9518 0.2277 < 0.0001 0.047 2.912 0.316 < 0.0001 0.549 2.641 0.199 < 0.0001 0.401
HIS 3.0330 0.2264 0.0022 1.133 3.885 0.244 0.0014 1.403 3.742 0.190 0.0038 1.482
ILE 1.1824 0.0366 < 0.0001 0.886 1.100 0.026 < 0.0001 1.043 1.124 0.033 < 0.0001 1.088
LEU 1.1723 0.0980 < 0.0001 0.897 1.161 0.081 < 0.0001 0.989 1.136 0.070 < 0.0001 1.076
LYS 1.2946 0.0682 < 0.0001 0.763 1.316 0.062 < 0.0001 0.853 1.393 0.061 < 0.0001 0.824
MET 2.7132 0.2046 0.0003 0.784 3.138 0.205 < 0.0001 0.747 3.151 0.212 < 0.0001 0.902
PHE 1.9166 0.0821 < 0.0001 0.085 2.096 0.089 < 0.0001 0.167 1.998 0.074 < 0.0001 0.230
PRO 2.2688 0.3933 < 0.0001 0.299 2.592 0.196 < 0.0001 0.268 2.371 0.135 < 0.0001 0.136
SER 1.5879 0.0914 < 0.0001 0.444 1.770 0.115 < 0.0001 0.454 1.958 0.124 < 0.0001 0.269
THR 1.5873 0.0675 < 0.0001 0.444 1.863 0.075 < 0.0001 0.372 1.965 0.074 < 0.0001 0.263
TRP 3.7128 0.1699 0.0499 1.875 4.057 0.184 0.0019 1.554 3.717 0.273 0.009 1.457
TYR 2.1025 0.1206 < 0.0001 0.118 2.240 0.110 < 0.0001 0.041 2.125 0.096 < 0.0001 0.105
VAL 1.0832 0.0251 < 0.0001 0.994 1.077 0.024 < 0.0001 1.062 1.099 0.029 < 0.0001 1.112

Statistical analysis of U values. The analysis used Eq. 1 and considered different intervals for the definition of degeneration (a1 parameter in Eq. 1) and conservation (a2 parameter in Eq. 1). Avrg, indicates average value found for ModBase homology models separated by organism (13 organisms). SEM, standard error of means (p-value calculated with n=13); in the Grubb test column, the results of the Grubb's test for outlier, with critical Z-score (for N=20) of 2.71. Outliers with p-value <0.05 are shown in bold.

*

The p-value refers to pairwise comparison of calculated values (e.g., “ModBase Avrg” values), between Cys and each one of the other amino acids.

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