Table 1.
Nucleotide diversity and neutral test at OsAMT1;1
| Test set a | Entire sequenced region (2688 bp) | Coding region (1494 bp) | Non-coding region (1194 bp) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| S | π×103 | θ×103 | D1 | D2 | S | π×103 | θ×103 | D1 | D2 | S | π×103 | θ×103 | D1 | D2 | |
| All (n = 216) | 32 | 0.37 | 2.01 | -2.33** | -2.01 | 10 | 0.16 | 1.12 | -2.04* | -0.10 | 22 | 0.63 | 3.13 | -2.15** | -2.57* |
| O. rufipogon (n = 19) | 26 | 1.72 | 2.78 | -1.59 | -0.57 | 7 | 0.99 | 1.34 | -1.22 | 0.79 | 19 | 2.65 | 4.60 | -1.62 | -1.16 |
| O. sativa (n = 190) | 7 | 0.04 | 0.45 | -1.93* | -3.58** | 1 | 0.03 | 0.11 | -0.77 | 0.45 | 6 | 0.06 | 0.87 | -1.89* | -4.08** |
| Indica (n = 102) | 6 | 0.06 | 0.43 | -1.90* | -3.67** | 1 | 0.05 | 0.13 | -0.69 | 0.49 | 5 | 0.08 | 0.81 | -1.90* | -4.29** |
| Japonica (n = 85) | 1 | 0.02 | 0.07 | -0.90 | 0.50 | 0 | 0 | 0 | NA | NA | 1 | 0.04 | 0.17 | -0.91 | 0.50 |
a n in parentheses is the number of accessions used; S, number of segregating sites; π, nucleotide diversity per site; θ, Watterson's estimator; D1, Tajama's D; D2, Fu and Li's D*; NA, not applied; *, ** significant at 0.05 and 0.01(or 0.02) level for Tajama's D (or Fu and Li's D*), respectively.