Table 1.
Evaluation of the constructed three-dimensional model of archaeal MBF1 from Thermoproteus tenax (TMBF1)
| Criteria | Characteristic | MBF1 (M1-E157) |
MBF1 (R64-N141) |
2b5a (A) |
1y9q (A) |
1x57 (A) |
1utx (A) |
|---|---|---|---|---|---|---|---|
| PROCHECK | Most favored regions | 60.0% | 94.1% | 97.1% | 93.1% | 84.7% | 93.3% |
| Additional allowed | 24.4% | 5.9% | 2.9% | 6.3% | 11.1% | 6.7% | |
| Generally Allowed | 8.9% | 0% | 0.0% | 0.6% | 2.8% | 0.0% | |
| Disallowed regions | 6.7% | 0% | 0.0% | 0.0% | 1.4% | 0.0% | |
| WHATCHECK (Z-scores) | 2nd generation packing quality | -4.061 | -0.752 | -0.1 | -0.9 | -1.758 | -0.7 |
| VERIFY-3D | 3D-1 D score (≥0.2) | 72.15% | 64.56% | 84.62% | 98.28% | 96.74% | 100% |
PDB ID: 2b5a, C.BCLI, control element of the BCLI restriction modification system (Bacillus caldolyticus); PDB ID: 1y9q, HTH_3 family transcriptional regulator (Vibrio cholerae); PBD ID: 1x57, EDF-1, human multiprotein bridging factor 1 α; PDB ID: 1utx, CYLR2, Transcriptional repressor of cytolysin operon (Enterococcus faecalis).