Table 2.
Strains and plasmids used in this study.a
Strain or plasmid | Marker(s)b | Relevant genotype | Reference or source |
---|---|---|---|
R. sphaeroides strains: | |||
JE8777 | 2.4.1 wild-type | Lab collection | |
JE10754 | ΔcobB | (Gray & Escalante-Semerena, 2009) | |
JE10755 | ΔcobB ΔcbiZ | (Gray & Escalante-Semerena, 2009) | |
JE10778 | TcR | ΔcobB / pRK404 | |
JE10779 | TcR | ΔcobB ΔcbiZ / pRK404 | |
JE10781 | TcR | ΔcobB ΔcbiZ / pRsCBIZ6 | |
JE11661 | SpR SmR | ΔcobB bluB∷aadA | |
JE11662 | SpR SmR | ΔcobB ΔcbiZ bluB∷aadA | |
JE11805 | SpR SmR TcR | ΔcobB bluB∷aadA / pRK404 | |
JE11806 | SpR SmR TcR | ΔcobB bluB∷aadA / pBLUB19 | |
JE11807 | SpR SmR TcR | ΔcobB ΔcbiZ bluB∷aadA / pRK404 | |
JE11808 | SpR SmR TcR | ΔcobB ΔcbiZ bluB∷aadA / pBLUB19 | |
JE11821 | SpR SmR TcR | ΔcobB ΔcbiZ bluB∷aadA / pRsCBIZ6 | |
S. enterica strains: | |||
TR6583 | metE205 ara-9 derivative of strain LT2 | K. Sanderson via J.R. Roth | |
JE8248 | metE205 ara-9 cobS1313 | lab collection | |
E. coli strains: | |||
DH5α/F’ | F’ / endA1 hsdR17(rk-mk+) glnV44 thi-1 recA1 gyrA(NalR) relA1 Δ(lacIZYA-argF)U169 deoR (ϕ80dlacΔ(lacZ)M15) | (Woodcock et al., 1989, Raleigh et al., 1989) | |
S17-1 | recA pro hsdR RP4-2-Tc∷Mu-Km∷Tn7 | (Simonet al., 1983) | |
BL21(DE3) | F-ompT gal dcm lon hsdSB(rB-mB-) λ(DE3 [lacl lacUV5-T7 gene 1 ind1 sam7 nin5]) | Novagen | |
Plasmids: | |||
pGEM®-T Easy | ApR | TA cloning vector | Promega |
pK18mobsacB | KmR SucS | suicide vector for allelic exchange | (Schafer et al., 1994) |
pRK404 | TcR | shuttle vector with lac promoter | (Ditta et al., 1985) |
pSRA2 | ApR SpR SmR | aadA+ | (Frigaard et al., 2004) |
pKLD66 | ApR | TEV protease-cleavable maltose-binding protein / His6 tag overexpression vector | (Rocco et al., 2008) |
pRsCBIZ3 | ApR | R. sphaeroides cbiZ+ translational fusion to maltose-binding protein / His6 tag for protein purification | |
pRsCBIZ6 | TcR | R. sphaeroides cbiZ+ | |
pBLUB19 | TcR | R. sphaeroides bluB+ | |
pBLUB20 | ApR | R. sphaeroides bluB+ region | |
pBLUB21 | ApR | ΔbluB for R. sphaeroides | |
pBLUB23 | ApR SpR SmR | bluB∷aadA for R. sphaeroides | |
pBLUB24 | KmR SucS SpR SmR | bluB∷aadA for R. sphaeroides |
Unless otherwise indicated, all strains and plasmids were constructed during the course of these studies.
TcR, tetracycline resistance; SpR, spectinomycin resistance; SmR, streptomycin resistance; ApR, ampicillin resistance; KnR, kanamycin resistance; SucS, sucrose sensitivity.