Table 1. Interatomic distances in G107 or S107 TCR.
TCR | TRBV13-2 | PDB ID | CDR3β | Distance a | Distance b | Distance c |
D10 | Y | 1D9K | CASGGQGRAEQFF | 4.81 | 5.73 | 5.40 |
172.10 | Y | 1U3H | CASGDAGGGYEQYF | 4.98 | 5.28 | 4.90 |
2C | Y | 2OI9 | CASGGGGTLYF | 5.12 | 5.25 | 4.85 |
Mean ± S.D. | 4.97±0.16 | 5.42±0.27 | 5.05±0.30 | |||
HA1.7 | N | 1FYT | CASSSTGLPYGYTF | 5.06 | NA | 4.82 |
AHIII 12.2 | N | 1LP9 | CASSDWVSYEQYF | 5.17 | 4.95 | 4.88 |
N15 | N | 1NFD | CASSLRWGDEQYF | 4.55 | NA | 5.26 |
JM22 | N | 1OGA | CASSRSSYEQYF | 4.59 | 6.04 | 4.96 |
1G4 | N | 2BNQ | CASSYVGNTGELFF | 4.82 | NA | 4.98 |
KK50.4 | N | 2ESV | CASSQDRDTQYF | 4.84 | 5.67 | 4.93 |
3A6 | N | 1ZGL | CASSLADRVNTEAFF | 6.12 | NA | 5.60 |
Mean ± S.D. | 5.02±0.53 | 5.55±0.55 | 5.06±0.28 |
TCR with a G107 (TRBV13-2+) or S107 (TRBV13-2−) TCRβ were analyzed. Distances measured are indicated in Fig. 2d and the text, and are measured in Å. PDB ID and CDR3β sequence of structures studied are listed.