TABLE 1.
Mate-pair sample summary
| Aphidicolin treated |
|||
|---|---|---|---|
| Untreated 090 | A3A2 | A1A1 | |
| Lanes | 4 | 3 | 2 |
| Libraries | 4 | 2 | 2 |
| Read length | 35–39 | 35–36 | 35–36 |
| Mean fragment length (kb) | 2.9–4.4 | 2.8–3.4 | 2.9–3.0 |
| SD fragment length (kb) | 0.22–0.42 | 0.24–0.55 | 0.29–0.35 |
| Mate pairs | 5.9 × 107 | 2.9 × 107 | 1.7 × 107 |
| Unique mate pairs | 4.4 × 107 (74%) | 2.1 × 107 (74%) | 1.2 × 107 (73%) |
| Fraction mapped reads | 84% | 81% | 83% |
| ∼3-kb fragments | 2.4 × 107 (56%) | 8.3 × 106 (39%) | 6.0 × 106 (48%) |
| Haploid fragment coverage | 24.9 | 8.7 | 5.8 |
| Diploid fragment coverage | 12.4 | 4.3 | 2.9 |
| Haploid read coverage | 0.6 | 0.2 | 0.1 |
| Diploid read coverage | 0.3 | 0.1 | 0.1 |