Table IV.
Canonical location of CR | Subfamily members with CR in canonical location (%) | Subfamily members with only 1 Cys in sequence (%)a | Subfamily members with alternative locations for CR (location, %) | Uncertainb (%) | |
---|---|---|---|---|---|
BCP/PrxQ | Helix α2c (CPXXXXCR) | 54 | 13 | Helix α3 7 | 26 |
AhpC/Prx1 | C-terminusd | 99.1 | 0.4 | - | 0.5 |
Prx6 | No CR | - | 40 | C-terminus 1.6 Helix α3 0.8 |
57 |
Prx5 | Helix α5 | 17 | 14 | - | 69e |
Tpx | Helix α3f | 96.4 | 1.0 | - | 2.6 |
AhpEg | No CR | - | 28 | Helix α2 56 | 16 |
If no CR is present, the resolving thiol must come from another protein or a small molecule thiol like glutathione.
These sequences contain more than one Cys, however the other Cys are not in a location shown to serve as a CR. Many of these proteins are expected to function as 1-Cys Prxs, but this cannot be proven without experimental verification.
Structural designations come from Hall et al 201016.
The CR for the AhpC/Prx1 subfamily is found near the C-terminus where it forms a disulfide bond across the B-interface with the CP on its partner subunit. Mycobacterium tuberculosis AhpC contains a third Cys that is present two residues after the canonical CR that may in some cases act as a replacement for the CR 78. While 6.7% of the AhpC/Prx1 proteins contain the CRXC motif, 2.2% contained only the second Cys, providing support for its ability to serve a functional role.
This category includes the 16% of Prx5 subfamily members that are fused to a Grx domain.
The CR in the Tpx subfamily is located immediately following the highly conserved Trp used as a key residue to create the functional site signatures – Cys92 in Fig 3E.
The canonical AhpE from M. tuberculosis has no CR, but a majority of the subfamily members identified here have a putative CR five residues after the CP, similar to the BCP/PrxQ subfamily.