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. Author manuscript; available in PMC: 2012 Jan 2.
Published in final edited form as: DNA Repair (Amst). 2010 Oct 20;10(1):24–33. doi: 10.1016/j.dnarep.2010.09.005

Table 1.

DNA substrates*

21-19/41-mer 5′-CGCAGCCGTCCAACCAACTCA pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGCAGCTAGGTTACGGCAGG-5′
21-19/42-mer 5′-CGCAGCCGTCCAACCAACTCA   pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGGCAGCTAGGTTACGGCAGG-5′
21-19/43-mer 5′-CGCAGCCGTCCAACCAACTCA    pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGAGCAGCTAGGTTACGGCAGG-5′
21-19/44-mer 5′-CGCAGCCGTCCAACCAACTCA       pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGAGGCAGCTAGGTTACGGCAGG-5′
21-19/45-mer 5′-CGCAGCCGTCCAACCAACTCA          pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGAGTGCAGCTAGGTTACGGCAGG-5′
21-19/46-mer 5′-CGCAGCCGTCCAACCAACTCA              pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGAGTGGCAGCTAGGTTACGGCAGG-5′
21-19/47-mer 5′-CGCAGCCGTCCAACCAACTCA                 pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGAGTGCGCAGCTAGGTTACGGCAGG-5′
21-19/48-mer 5′-CGCAGCCGTCCAACCAACTCA                   pCGTCGATCCAATGCCGTCC-3′
3’-GCGTCGGCAGGTTGGTTGAGTCGAGTGCGGCAGCTAGGTTACGGCAGG-5′
21-19/49-mer 5′-CGCAGCCGTCCAACCAACTCA                        pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGAGTGCGAGCAGCTAGGTTACGGCAGG-5′
21-19/50-mer 5′-CGCAGCCGTCCAACCAACTCA                         pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGAGTGCGACGCAGCTAGGTTACGGCAGG-5′
21-19T/42-
merCGA		 5′-CGCAGCCGTCCAACCAACTCA  pTGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCGACAGCTAGGTTACGGCAGG-5′
21-19/42-
merCAG		 5′-CGCAGCCGTCCAACCAACTCA  pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCAGCAGCTAGGTTACGGCAGG-5′
21-19/47-
merCAT		 5′-CGCAGCCGTCCAACCAACTCA                pCGTCGATCCAATGCCGTCC-3′
3′-GCGTCGGCAGGTTGGTTGAGTCATGTGCGCAGCTAGGTTACGGCAGG-5′
*

Nucleotides located in the gap are in bold, and those that were inserted to expand the gap size are underlined. p denotes the 5′-end is phosphorylated.