Table 5.
Rejection rates of H0 for CADM comparing data sets simulated on identical trees (CMI = 2, M = 2), with different evolutionary parameters (GTR model with different s or α, for each data set).
| s = 0.02 | s = 0.4 | α = 0.06 | α = 0.8168 | α = 200 | ||||
|---|---|---|---|---|---|---|---|---|
| n | L | α: 200 vs. 0.06 | α: 200 vs. 0.8168 | α: 200 vs. 0.06 | α: 200 vs. 0.8168 | s: 0.02 vs. 0.4 | s: 0.02 vs. 0.4 | s: 0.02 vs. 0.4 |
| 10 | 1000 | 0.866 | 0.939 | 0.993 | 1.000 | 0.949 | 0.998 | 0.999 |
| (0.845-0.887) | (0.924-0.954) | (0.988-0.998) | - | (0.935-0.963) | (0.995-1.000) | (0.997-1.000) | ||
| 5000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
| 10 000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
| 20 000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
| 25 | 1000 | 0.927 | 0.965 | 1.000 | 1.000 | 0.992 | 1.000 | 1.000 |
| (0.911-0.943) | (0.954-0.976) | - | - | (0.986-0.998) | - | - | ||
| 5000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
| 10 000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
| 20 000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
| 50 | 1000 | 0.945 | 0.980 | 1.000 | 1.000 | 0.999 | 1.000 | 1.000 |
| (0.931-0.959) | (0.971-0.989) | - | - | (0.997-1.000) | - | - | ||
| 5000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
| 10 000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
| 20 000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| - | - | - | - | - | - | - | ||
Rejection rates are given at a significance level of 0.05, with 95% confidence intervals in parentheses. Calculated from 1000 replicates.