Figure 3.

Resolution of recombination breakpoints. (A) A histogram of 373 inferred recombination breakpoint intervals (coordinates where posterior probability of a given ancestry switches from ≥95% to ≤5%) for our backcross experiment. The red asterisks indicate the median breakpoint resolution in our experiment (96-plex, 2% divergence). (B,C) Box and whisker plots of the medians of 100 subsamples of the data to examine effects of (B) increased multiplexing and (C) decreased divergence between the strains being crossed.