Table 1. Probes used in the tpTAIL-PCR amplifications.
Primer | Target DNA | Sequence | Tm* |
S 34 | T. cruzi kDNA | 5′ ACA CCA ACC CCA ATC GAA CC 3′ | 57,9 |
S 67 | T. cruzi kDNA | 5′ GGT TTT GGG AGG GG(G/C) (G/C)(T/G)T C 3′ | 60,1 |
S 35 | T. cruzi kDNA | 5′ ATA ATG TAC GGG (T/G)GA GAT GC 3′ | 59,4 |
S 36 | T. cruzi kDNA | 5′ GGT TCG ATT GGG GTT GGT G 3′ | 57,9 |
Gg1 | G. gallus | 5′ AGC TGA TCC TAA AGG CAG AGC 3′ | 60.1 |
Gg2 | G. gallus | 5′ CTG AGC CTC TGC TTT GAA A 3′ | 56.8 |
Gg3 | G. gallus | 5′ TTT CAA AGC AGA GGC TCG G 3′ | 60.1 |
Gg4 | G. gallus | 3′ GCT CTG CCT TTA GGA TCA GCT 5′ | 64.2 |
Gg5 | G. gallus | 3′ AGC AAC TCA GCG TCC ACC TT 5′ | 62.3 |
Gg6 | G.gallus | 3′ CTG TTA GCA TGA GGC TTC ACA A 5′ | 60.4 |
XeCRs-1a | G. gallus | 5′ ATW TCW GTS TTT GCA GAT GAC ACA 3′ | 60.4 |
XeCRs-2 | G. gallus | 5′ CTT WGT TGC CCT YCT CTG KAC YCT CTC YA 3′ | 66.6 |
XeCRs-3 | G. gallus | 5′ TGT GTC ATC TGC AAA SAC WGA WAT 3′ | 65.3 |
XeCRs-4 | G. gallus | 5′TRG AGA GRG TMC AGA GRA GGG CAA CWA TG | 3′ 67.9 |
*Tm = average annealing temperature °C.
XeCrs primer sets were a gift from Professor Dusan Kordis to Dr. Jiri Hejnar, Czech Academy of Sciences, Praha.