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. 2010 Dec 13;55(3):1173–1176. doi: 10.1128/AAC.00817-10

TABLE 1.

Oligonucleotide primers used in this study

Determinant and location	Target gene	Primer sequence (5′ to 3′)	Expected amplicon size (kb)
fusB in SaRI_fusB	SAS1815	TAAAAAAATCTACTCAAAAC	2.7
fusB in SaRI_fusB	fusB	TAAATGATAAAGAAACCGTC	2.7
fusB in pUB101 or pUB102	blaZ	TAGATACTAAAAGTGGTAAGG	3.4 (pUB101), 2.6 (pUB102)
fusB in pUB101 or pUB102	fusB	CTATAATGATATTAATGAGATTTTTGG	3.4 (pUB101), 2.6 (pUB102)
fusC in SCC₄₇₆	SAS0040	AGGTGGATTGATGGGAGTTAAG	1.3
fusC in SCC₄₇₆	fusC	ATTATTTATATCATCTAGGTTCTG	1.3
fusC in SCC₄₇₆	SAS0045	AGTTCTATACTGAAGGTTATGG	2.6
fusC in SCC₄₇₆	fusC	TTAAAGAAAAAGATATTGATATCTCGG	2.6
fusC in SCC_mecN1	Upstream of fusC within SCC_mecN1	CTAATATGTTGGCGCTGATAT	10.1 or 3.7^a
fusC in SCC_mecN1	fusC	ACAAACGATATGAATTCCCA	10.1 or 3.7^a
fusC (SCC_mecN1)^b	ccrAB4-1_CHE482-ccrAB4-2_CHE482	CAAATGATTGAAACAGAGGT	0.8
fusC (SCC_mecN1)^b	ccrAB4-1_CHE482-ccrAB4-2_CHE482	CACGTTTTCTACAATAACGT	0.8

^a

Depending on the SCC_mecN1 variant (6).

^b

The primers do not detect fusC directly but probe for the fusC-associated element SCC_mecN1 (6).