TABLE 3.
Genes identified and sequence similarities in the Gordonia sp. strain SoCg alk locus
| Gene | Product length (amino acids) | Best BLASTP alignment (accession no.) | Overlap (% identity) |
|---|---|---|---|
| orf1 | 124 | Conserved hypothetical protein, Rhodococcusequi ATCC 33707 (06829834.1) | 48/124 (38) |
| alkB | 411 | Alkane 1-monooxygenase, Gordonia sp. strain TF6 (BAD67020.1) | 287/323 (88) |
| rubA3 | 55 | Rubredoxin 3, Gordonia sp. strain TF6 (BAD67021.1) | 45/54 (83) |
| rubA4 | 61 | Rubredoxin 4, Gordonia sp. strain TF6 (BAD67022.1) | 34/59 (57) |
| rubB | 400 | Rubredoxin reductase, Gordonia sp. strain TF6 (BAD67023.1) | 249/349 (71) |
| alkU | 160 | Putative transcriptional regulator, TetR family, Mycobacteriumabscessus (YP 001704325.1) | 87/168 (51) |