TABLE 2.
Predicted phylogenetic origins of the antibacterial fosmid insert DNA using the Phylopythia and MEGAN algorithmsa
| Program | Clone | Domain | Phylum | Class | Order | Genus | Others |
|---|---|---|---|---|---|---|---|
| Phylopythia | CcAb1 | Bacteria | Proteobacteria | Deltaproteobacteria | |||
| CcAb2 | Bacteria | Proteobacteria | Deltaproteobacteria | ||||
| UaAb1 | Bacteria | Proteobacteria | Alphaproteobacteria | ||||
| MEGAN | CcAb1 | Bacteria (2) | Proteobacteria (4) | Gammaproteobacteria (17) | Not assigned/ no hits (9) | ||
| CcAb2 | Bacteria (4) | Gammaproteobacteria (2) | Solibacter usitatus (4) | Not assigned/ no hits (11) | |||
| UaAb1 | Sphingomonadales (16) | Sphingomonas sp. (1) |
a
Numbers in parentheses indicate the number of ORFs assigned to that particular category.