TABLE 3.
TRFa | Highest BLAST hitb | Highest published BLAST hit with named genus or genus and species designationb | Bacterial group |
---|---|---|---|
M89 | Uncultured bacterium from manure, potato plant root bacterium | Cellulophaga tyrosinoxydans, Cytophaga spp. | Cytophaga-Flexibacter-Bacteroidetes |
M96 | Uncultured compost bacterium, uncultured bacterium from beetle hindgut, uncultured bacterium from cattle feedlot, uncultured Fluviicola | Proteiniphilum acetatigenes, Fluviicola spp. | Cytophaga-Flexibacter-Bacteroidetes |
M99 | Uncultured bacterium from cattle feedlot | Bacteroides spp. | Cytophaga-Flexibacter-Bacteroidetes |
M118c | |||
M142 | Uncultured bacterium from wetland soil, Cellulosimicrobium cellulans | Marinomonas spp., Cellulosimicrobium cellulans | Gammaproteobacteria, Actinomycetales |
M156 | Uncultured bacterium from cattle feedlot, uncultured bacterium from hyena feces | Lysobacter spp., Caryophanon spp. | Gammaproteobacteria, Firmicutes |
M202c | |||
M299 | Uncultured bacterium from bovine feces, uncultured bacterium from cattle feedlot, Marinobacter spp., Halomonas spp. | Clostridium spp., Faecalibacterium prausnitzii, Marinobacter excellens, Halomonas venusta | Firmicutes, Gammaproteobacteria |
M488 | Uncultured bacterium from biogas reactor | Oenothera phytoplasma | Mollicutes |
M492 | Uncultured bacterium from wastewater | Arenimonas donghaensis | Gammaproteobacteria |
M510 | Uncultured compost bacterium | Bordetella petrii | Betaproteobacteria |
TRF is from the 8F primer site to the first MspI site.
BLAST analysis (1) was used to compare TRF sequences to sequences in GenBank. Putative identifications are highlighted if they possess a ≥99% (boldface) or <89% (underlined) sequence identity across the cloned TRFs.
No clones containing the target fragment length were identified.